G10275


Basic Information

Item Value
gene id G10275
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 18783017 ~ 18783447 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU12191
CAAAAAGGTTCATGCAAAATAATGACCAACCCCCAATAGACAGGTCAGCATAGTCCTTAAatagttttaatgaaaaaaaaatcgatATTTTTGCAAATCAGCTGAATGTGTAGCAGAAGTGTACAATATGTACATCACATACATTTTATTGCAAAGCATCATATGTCACCTGATCACATCATACTCTTTTCATTATGATATTTGTACATTGGCAGGACacatctaaatatttttaataaaaaatactaaggtcaaaaatacatgcatttaCAGGATTCATAACATGCACCACTTTTTCAGCTCAGGAAAATATACCACCGCTGACAATTTAAgtgaattttttatattttgatctAGTTTAATTTAGTTCAAAAACCACAATGCAAATATGAATCAGTAAATAATTTGTATACTACAACACTATACgtttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU12191 True 431 lncRNA 0.29 1 18783017 18783447

Neighbor

gene id symbol gene type direction distance location
ctsk catk,ctsk,LOC108441922 coding downstream 22790 18756188 ~ 18760227 (-)
LOC113533916 ctss coding downstream 31557 18742043 ~ 18751460 (-)
mcl1b LOC108268142,LOC100304882 coding downstream 89229 18691583 ~ 18693788 (-)
tmod4 tmod4,LOC107663362,LOC107689841 coding downstream 119386 18654139 ~ 18663631 (-)
lysmd1 lysmd1 coding downstream 134155 18645148 ~ 18648862 (-)
hapln2 hapln2 coding upstream 74101 18857548 ~ 18860680 (-)
nes nes coding upstream 201331 18984778 ~ 18991821 (-)
gpatch4 gpatch4 coding upstream 214884 18998331 ~ 19002364 (-)
lmna lmna,LOC107598000,LOC107671682,LOC107704890,LOC107587813 coding upstream 264006 19047453 ~ 19071860 (-)
mc5rb mc5rb,LOC108267943,LOC108410772,LOC107704891,LOC107741731 coding upstream 301735 19085182 ~ 19091614 (-)
G10166 NA non-coding downstream 368609 18413706 ~ 18414408 (-)
G10124 NA non-coding downstream 421987 18360807 ~ 18361030 (-)
G10121 si:dkey-27n14.1,LOC108263335,LOC108428912,LOC107749301,LOC107685608,LOC107596760 non-coding downstream 427065 18354911 ~ 18355952 (-)
G10083 NA non-coding downstream 584671 18198127 ~ 18198346 (-)
G10082 NA non-coding downstream 584984 18197318 ~ 18198033 (-)
G10314 NA non-coding upstream 56359 18839806 ~ 18840038 (-)
G10461 NA non-coding upstream 72078 18855525 ~ 18980359 (-)
G10460 NA non-coding upstream 115975 18899422 ~ 18908394 (-)
G10486 NA non-coding upstream 213296 18996743 ~ 18998015 (-)
G10581 NA non-coding upstream 569606 19353053 ~ 19353263 (-)
ensab ensab,LOC108268136,LOC108441925,LOC103045558,LOC107741750,LOC107587831,LOC107663348,LOC107597988,LOC107732479 other downstream 82012 18695036 ~ 18701005 (-)
sema6e sema6c,sema6e,LOC108429044,LOC107587820 other downstream 275494 18383588 ~ 18507523 (-)
G10064 NA other downstream 586256 18188563 ~ 18196761 (-)
G10068 nop2,LOC107685519,LOC107749104,LOC107699935,LOC104957145 other downstream 608451 18172187 ~ 18174566 (-)
gask1a fam198a other downstream 1386044 17377902 ~ 17396973 (-)
rrnad1 rrnad1 other upstream 41934 18825381 ~ 18832204 (-)
ccn4b wisp1,wisp1b,LOC107714595,LOC107724778,LOC107587903,LOC107552812 other upstream 758912 19542359 ~ 19547501 (-)
trnaq-cug_4 NA other upstream 903061 19686508 ~ 19686867 (-)
trnaq-cug_5 NA other upstream 906546 19689993 ~ 19690064 (-)
trnaq-cug_6 NA other upstream 909712 19693159 ~ 19693230 (-)

Expression


Co-expression Network