LOC113533916 (ctss)


Basic Information

Item Value
gene id LOC113533916
gene name ctss
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 18742043 ~ 18751460 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926383.2
ttataaGCCGAAACCGATACAGGCATGTGTCACTCAGGTTCTGCTTCCTCCTGGTGAAGGTTGTGTAAGTCAGAggcacacagaggcacacagagGTGAATATGTTGTTGAGGAGCTTGCTGTTCACAGTGATCTTTGGGGCAGTAGTGGCCCTTAAAGACCCAAGCCTGGACATGCACTGGCTGCTGTGGAAGAAAAATCACAGCAAAACTTACACCAGTGAGTTGGAGGAGTTTACACGAAGTTAGACTTGGGAGAGGAACCTACGCTTGGTCACTCTGCACAACCTGGAGGCCTCTTTGGGAATGCACACATATGAATTGGGCATGAACCATATGGGAGACATGACTAGAGAGGAGATCCTGCAGATGTTTGCTGGGACTCGAGTACCTCCTAACCTGACAAGGAGGTCTTCTACATTTGTTGCCTCTGCTGGAATTTCGGCACCAGATTCAGTTGACTGGAGAGATAAGGGCTATGTAACAGAGGTCAAGAACCAGGGTTCGTGTGGCTCATGCTGGGCATTCAGTGCTGCTGGTGCACTAGAAGGTCAGCTAAAGAGGACTACAGGTCAGGTGAAGTCTCTCAGTTCCCAGAACTTGGTGGACTGCTCTTCTAAGTATGGAAACAAGGGCTGCCATGGAGGTTTCATGACATGGGCCTTCCAGTATGTCATTGACAACGGTGGTATAGACTCTGATGAAGCCTACCCTTACACTGCAGTGGATGGACAGTGCAGGTATGACCAATCACAACGTGCTGCCAATTGCTCCAGTTATAATTACGTTTCTCAGGGTAATGAGGAGGCACTTAAGCAAGCTGTGGCCACCATTGGACCCATCTCTGTGGCTATTGATGCTACTCGCCCAAAGTTCATCCTGTACCGCAGCGGTGTCTACAATGACCCAAGCTGCACCCAGGATGTAAACCATGGAGTGCTGGCTGTAGGGTATGGCAGCCTGAATGGAGAGGACTACTGGCTAGTGAAAAACAGCTGGGGTACTGGATTTGGAGATGGAGGATACATCCGCATGGCCCGCAACAAAGGCAATATGTGTGGCATTGCAAGTTATGCTTGCTATCCAATCATGTAGCACAGATAGGCAGAAGCATATTCTTAGAATcaaatgttttatgattttatctttactttaaatgtgattgttttactaaataaattgattttatacttttttgtaCAGAAATTGAAACTGTGgcatgaaaacatgattctAGCCCACTGAATTTACAAGTGACTTTTTATTAGTGCAACATCACCACAAACAATTTCACATGAGGTATCAAAGGATTTTCAAAATTGGTACACAACATCCAGTTATGATTGACACGTAGACTGTCATGATTCAAAACCTTTGGTTGGTTAGCAACATTCATAGGTTAACATGAGGAGAGAATGGCACAATGACTTACTGACAGATGTCCCAAATAAAAGTGACACAAACACGATGAATGGCAAtgattttaaagctttttgGTACCTGTAACCTTTATATGTTTTAGAGATCACAATATTGAACACCTTTGTAACAAGAAAATCAGATGCCAACTTCTGTTCTAAAGTGTCTTTCAGTTCTACAAGCTGAAAGGTCAATTGTGTATATACTTCGAACATTTCTAAAATTATATTCTATTTAGACAAATTACAAAACGTGTCCAGTGGCTGTAACTATATTATGAACAGACACTTTACAGTTTTAGTCAAGTTTGGCTCTTAAGTCATCTATGTTCAACTGTCACCTAttcttttttgatttattttttaactggtTACACTCTTGTGGGAAGAATAAACAATCATAAATACAGCAAGACCA

Function

symbol description
ctss Enables several functions, including collagen binding activity; fibronectin binding activity; and laminin binding activity. Involved in several processes, including antigen processing and presentation of exogenous peptide antigen via MHC class II; collagen catabolic process; and proteolysis. Located in cytoplasmic vesicle; extracellular space; and lysosome. Implicated in neuropathy. Biomarker of Alzheimer's disease; Down syndrome; carotid artery disease; intracranial aneurysm; and relapsing-remitting multiple sclerosis.

NR:

description
cathepsin S precursor

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K01368 CTSS; cathepsin S

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926383.2 True 1835 mRNA 0.42 8 18742043 18751460

Neighbor

gene id symbol gene type direction distance location
mcl1b LOC108268142,LOC100304882 coding downstream 48255 18691583 ~ 18693788 (-)
tmod4 tmod4,LOC107663362,LOC107689841 coding downstream 78412 18654139 ~ 18663631 (-)
lysmd1 lysmd1 coding downstream 93181 18645148 ~ 18648862 (-)
kcnj14 kcnj14,LOC107749008,LOC107685531,LOC107596661,LOC103364940 coding downstream 401774 18324900 ~ 18340269 (-)
myh14 LOC108272574,LOC108429041 coding downstream 418419 18287082 ~ 18323624 (-)
ctsk catk,ctsk,LOC108441922 coding upstream 4728 18756188 ~ 18760227 (-)
hapln2 hapln2 coding upstream 106088 18857548 ~ 18860680 (-)
nes nes coding upstream 233318 18984778 ~ 18991821 (-)
gpatch4 gpatch4 coding upstream 246871 18998331 ~ 19002364 (-)
lmna lmna,LOC107598000,LOC107671682,LOC107704890,LOC107587813 coding upstream 295993 19047453 ~ 19071860 (-)
G10166 NA non-coding downstream 327635 18413706 ~ 18414408 (-)
G10124 NA non-coding downstream 381013 18360807 ~ 18361030 (-)
G10121 si:dkey-27n14.1,LOC108263335,LOC108428912,LOC107749301,LOC107685608,LOC107596760 non-coding downstream 386091 18354911 ~ 18355952 (-)
G10083 NA non-coding downstream 543697 18198127 ~ 18198346 (-)
G10082 NA non-coding downstream 544010 18197318 ~ 18198033 (-)
G10275 NA non-coding upstream 31557 18783017 ~ 18783447 (-)
G10314 NA non-coding upstream 88346 18839806 ~ 18840038 (-)
G10461 NA non-coding upstream 104065 18855525 ~ 18980359 (-)
G10460 NA non-coding upstream 147962 18899422 ~ 18908394 (-)
G10486 NA non-coding upstream 245283 18996743 ~ 18998015 (-)
ensab ensab,LOC108268136,LOC108441925,LOC103045558,LOC107741750,LOC107587831,LOC107663348,LOC107597988,LOC107732479 other downstream 41038 18695036 ~ 18701005 (-)
sema6e sema6c,sema6e,LOC108429044,LOC107587820 other downstream 234520 18383588 ~ 18507523 (-)
G10064 NA other downstream 545282 18188563 ~ 18196761 (-)
G10068 nop2,LOC107685519,LOC107749104,LOC107699935,LOC104957145 other downstream 567477 18172187 ~ 18174566 (-)
gask1a fam198a other downstream 1345070 17377902 ~ 17396973 (-)
rrnad1 rrnad1 other upstream 73921 18825381 ~ 18832204 (-)
ccn4b wisp1,wisp1b,LOC107714595,LOC107724778,LOC107587903,LOC107552812 other upstream 790899 19542359 ~ 19547501 (-)
trnaq-cug_4 NA other upstream 935048 19686508 ~ 19686867 (-)
trnaq-cug_5 NA other upstream 938533 19689993 ~ 19690064 (-)
trnaq-cug_6 NA other upstream 941699 19693159 ~ 19693230 (-)

Expression


Co-expression Network