RNA id: XM_026926383.2


Basic Information

Item Value
RNA id XM_026926383.2
length 1835
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC113533916
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 18742043 ~ 18751460 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttataaGCCGAAACCGATACAGGCATGTGTCACTCAGGTTCTGCTTCCTCCTGGTGAAGGTTGTGTAAGTCAGAggcacacagaggcacacagagGTGAATATGTTGTTGAGGAGCTTGCTGTTCACAGTGATCTTTGGGGCAGTAGTGGCCCTTAAAGACCCAAGCCTGGACATGCACTGGCTGCTGTGGAAGAAAAATCACAGCAAAACTTACACCAGTGAGTTGGAGGAGTTTACACGAAGTTAGACTTGGGAGAGGAACCTACGCTTGGTCACTCTGCACAACCTGGAGGCCTCTTTGGGAATGCACACATATGAATTGGGCATGAACCATATGGGAGACATGACTAGAGAGGAGATCCTGCAGATGTTTGCTGGGACTCGAGTACCTCCTAACCTGACAAGGAGGTCTTCTACATTTGTTGCCTCTGCTGGAATTTCGGCACCAGATTCAGTTGACTGGAGAGATAAGGGCTATGTAACAGAGGTCAAGAACCAGGGTTCGTGTGGCTCATGCTGGGCATTCAGTGCTGCTGGTGCACTAGAAGGTCAGCTAAAGAGGACTACAGGTCAGGTGAAGTCTCTCAGTTCCCAGAACTTGGTGGACTGCTCTTCTAAGTATGGAAACAAGGGCTGCCATGGAGGTTTCATGACATGGGCCTTCCAGTATGTCATTGACAACGGTGGTATAGACTCTGATGAAGCCTACCCTTACACTGCAGTGGATGGACAGTGCAGGTATGACCAATCACAACGTGCTGCCAATTGCTCCAGTTATAATTACGTTTCTCAGGGTAATGAGGAGGCACTTAAGCAAGCTGTGGCCACCATTGGACCCATCTCTGTGGCTATTGATGCTACTCGCCCAAAGTTCATCCTGTACCGCAGCGGTGTCTACAATGACCCAAGCTGCACCCAGGATGTAAACCATGGAGTGCTGGCTGTAGGGTATGGCAGCCTGAATGGAGAGGACTACTGGCTAGTGAAAAACAGCTGGGGTACTGGATTTGGAGATGGAGGATACATCCGCATGGCCCGCAACAAAGGCAATATGTGTGGCATTGCAAGTTATGCTTGCTATCCAATCATGTAGCACAGATAGGCAGAAGCATATTCTTAGAATcaaatgttttatgattttatctttactttaaatgtgattgttttactaaataaattgattttatacttttttgtaCAGAAATTGAAACTGTGgcatgaaaacatgattctAGCCCACTGAATTTACAAGTGACTTTTTATTAGTGCAACATCACCACAAACAATTTCACATGAGGTATCAAAGGATTTTCAAAATTGGTACACAACATCCAGTTATGATTGACACGTAGACTGTCATGATTCAAAACCTTTGGTTGGTTAGCAACATTCATAGGTTAACATGAGGAGAGAATGGCACAATGACTTACTGACAGATGTCCCAAATAAAAGTGACACAAACACGATGAATGGCAAtgattttaaagctttttgGTACCTGTAACCTTTATATGTTTTAGAGATCACAATATTGAACACCTTTGTAACAAGAAAATCAGATGCCAACTTCTGTTCTAAAGTGTCTTTCAGTTCTACAAGCTGAAAGGTCAATTGTGTATATACTTCGAACATTTCTAAAATTATATTCTATTTAGACAAATTACAAAACGTGTCCAGTGGCTGTAACTATATTATGAACAGACACTTTACAGTTTTAGTCAAGTTTGGCTCTTAAGTCATCTATGTTCAACTGTCACCTAttcttttttgatttattttttaactggtTACACTCTTGTGGGAAGAATAAACAATCATAAATACAGCAAGACCA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K01368 CTSS; cathepsin S

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12058 lncRNA downstream 274107 18383588 ~ 18467936 (-) False sema6e
TU12067 lncRNA downstream 327635 18413706 ~ 18414408 (-) True G10166
TU12008 lncRNA downstream 381013 18360807 ~ 18361030 (-) True G10124
TU12005 lncRNA downstream 386091 18354911 ~ 18355952 (-) True G10121
TU11947 lncRNA downstream 543697 18198127 ~ 18198346 (-) True G10083
TU12191 lncRNA upstream 31557 18783017 ~ 18783447 (-) True G10275
TU12238 lncRNA upstream 88346 18839806 ~ 18840038 (-) True G10314
TU12418 lncRNA upstream 104065 18855525 ~ 18980359 (-) True G10461
TU12420 lncRNA upstream 129581 18881041 ~ 18888873 (-) False G10461
TU12415 lncRNA upstream 147962 18899422 ~ 18908394 (-) True G10460
XM_026926457.2 mRNA downstream 41038 18695036 ~ 18701005 (-) True ensab
XM_026926549.2 mRNA downstream 48255 18691583 ~ 18693788 (-) True mcl1b
XM_026925942.2 mRNA downstream 78412 18654139 ~ 18663631 (-) True tmod4
XM_026926546.2 mRNA downstream 93181 18645148 ~ 18648862 (-) True lysmd1
XM_034303574.1 mRNA downstream 234521 18384118 ~ 18507522 (-) True sema6e
XM_026926534.2 mRNA upstream 4728 18756188 ~ 18760227 (-) True ctsk
XM_026926204.2 mRNA upstream 73921 18825381 ~ 18832201 (-) True rrnad1
XM_034309022.1 mRNA upstream 75689 18827149 ~ 18832203 (-) False rrnad1
XM_026926584.2 mRNA upstream 106088 18857548 ~ 18860680 (-) True hapln2
XM_026925950.2 mRNA upstream 233318 18984778 ~ 18991821 (-) False nes
TU12167 other downstream 41057 18695054 ~ 18700986 (-) False ensab
TU11919 other downstream 545282 18188563 ~ 18196761 (-) False G10064
TU11932 other downstream 567477 18172187 ~ 18174566 (-) True G10068
TU10747 other downstream 1994492 16744702 ~ 16747551 (-) True id4
XR_003403482.1 other downstream 2241570 16498358 ~ 16500473 (-) True LOC113534214
XR_004579128.1 other upstream 75353 18826813 ~ 18832204 (-) False rrnad1
TU12662 other upstream 790939 19542399 ~ 19547243 (-) False ccn4b
trnaq-cug_1 other upstream 925721 19677181 ~ 19677252 (-) True trnaq-cug_1
trnaq-cug_2 other upstream 928935 19680395 ~ 19680466 (-) True trnaq-cug_2
trnaq-cug_3 other upstream 932126 19683586 ~ 19683657 (-) True trnaq-cug_3

Expression Profile