Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU12420 |
| length | 401 |
| lncRNA type | inter_gene |
| GC content | 0.34 |
| exon number | 2 |
| gene id | G10461 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047595.1 |
| NCBI id | CM018541.1 |
| chromosome length | 35600603 |
| location | 18855525 ~ 18980359 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU12238 | lncRNA | downstream | 41003 | 18839806 ~ 18840038 (-) | True | G10314 |
| TU12191 | lncRNA | downstream | 97594 | 18783017 ~ 18783447 (-) | True | G10275 |
| TU12058 | lncRNA | downstream | 413105 | 18383588 ~ 18467936 (-) | False | sema6e |
| TU12067 | lncRNA | downstream | 466633 | 18413706 ~ 18414408 (-) | True | G10166 |
| TU12008 | lncRNA | downstream | 520011 | 18360807 ~ 18361030 (-) | True | G10124 |
| TU12415 | lncRNA | upstream | 10549 | 18899422 ~ 18908394 (-) | True | G10460 |
| TU12449 | lncRNA | upstream | 107870 | 18996743 ~ 18998015 (-) | True | G10486 |
| TU12558 | lncRNA | upstream | 464180 | 19353053 ~ 19353263 (-) | True | G10581 |
| TU12560 | lncRNA | upstream | 472431 | 19361304 ~ 19361511 (-) | True | G10583 |
| TU12624 | lncRNA | upstream | 578067 | 19466940 ~ 19467159 (-) | True | G10630 |
| XM_026926584.2 | mRNA | downstream | 20361 | 18857548 ~ 18860680 (-) | True | hapln2 |
| XM_034309022.1 | mRNA | downstream | 48838 | 18827149 ~ 18832203 (-) | False | rrnad1 |
| XM_026926204.2 | mRNA | downstream | 48840 | 18825381 ~ 18832201 (-) | True | rrnad1 |
| XM_026926534.2 | mRNA | downstream | 120814 | 18756188 ~ 18760227 (-) | True | ctsk |
| XM_026926383.2 | mRNA | downstream | 129581 | 18742043 ~ 18751460 (-) | True | LOC113533916 |
| XM_026925950.2 | mRNA | upstream | 95905 | 18984778 ~ 18991821 (-) | False | nes |
| XM_026925949.2 | mRNA | upstream | 95905 | 18984778 ~ 18991821 (-) | True | nes |
| XM_026926553.2 | mRNA | upstream | 109458 | 18998331 ~ 19002364 (-) | True | gpatch4 |
| XM_026926412.2 | mRNA | upstream | 158580 | 19047453 ~ 19071860 (-) | False | lmna |
| XM_034305574.1 | mRNA | upstream | 158580 | 19047453 ~ 19071800 (-) | True | lmna |
| XR_004579128.1 | other | downstream | 48837 | 18826813 ~ 18832204 (-) | False | rrnad1 |
| TU12167 | other | downstream | 180055 | 18695054 ~ 18700986 (-) | False | ensab |
| TU11919 | other | downstream | 684280 | 18188563 ~ 18196761 (-) | False | G10064 |
| TU11932 | other | downstream | 706475 | 18172187 ~ 18174566 (-) | True | G10068 |
| TU10747 | other | downstream | 2133490 | 16744702 ~ 16747551 (-) | True | id4 |
| TU12662 | other | upstream | 653526 | 19542399 ~ 19547243 (-) | False | ccn4b |
| trnaq-cug_1 | other | upstream | 788308 | 19677181 ~ 19677252 (-) | True | trnaq-cug_1 |
| trnaq-cug_2 | other | upstream | 791522 | 19680395 ~ 19680466 (-) | True | trnaq-cug_2 |
| trnaq-cug_3 | other | upstream | 794713 | 19683586 ~ 19683657 (-) | True | trnaq-cug_3 |
| trnaq-cug_4 | other | upstream | 797923 | 19686796 ~ 19686867 (-) | False | trnaq-cug_4 |
