RNA id: XR_004579128.1


Basic Information

Item Value
RNA id XR_004579128.1
length 1946
RNA type misc_RNA
GC content 0.49
exon number 8
gene id rrnad1
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 18825381 ~ 18832204 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAGTAGCGCACAATATCGGATTGAACCATAGTTTTAGCAACTCCAGCTAGTTGTAGTTGCAGGCATTTGTCTCCAGTGGCTCTTTGACAGTAAACCAGATTCTTGATGAAAAGTCCGTTCATTAAAAAGCCAGAACGATGAGGAGGAAACGGCGATGTTGTCAGGAAGAGATGTGAAAATGTTTACACTTTCAGAGCAGCAGCAGAAGGACTTGGCGAAGAGCCTTGTATCGTTCCTGTCGAGATATAAGCACATATCCGACTCTTACATTATTGAGTTTTTCAGTGAGAACCTGTGGGGAACACTACCTGAAGGATGGCAGAAAGCTTTGAGAGATTTATCACCACCTCAGATAGCAGACCTGCTGCTGGAAAGAGAGACCAAGAACAGAGTctaccCTTGTGTGTGGCCTCTATCTTTACTGGCACTACGGGCCACAGCTCACACACTGGCATTTCCTCGGATGTCTCCAACCTACTGGTCCAAGGACATGGTAAAGGCAGATGAATTTCACTCCAACTGCAGTCAAAGCTCTCTGCTTGATCATATATTCCGCAAACATGTGAAACCCAAGAAACAACATGAGATTCGTAAGCTTGGCATGTTGGTTAAGCAGCTATGTGACCAGACTCAGTGTAGCAGTGTGGTTGATGTTGGGTCTGGGCAGGGCCATTTGACCCGTTTCCTGTCATTTGGGCTTGGTCTGAATGTTACTGCTGTTGAGGCTGATTCCAATCTAGTTTCCATGGCCTCCAAATTTGATGGACAGCTCCTGTCAACCTTGGCCAAAGAGAGTCGGAAGaCAGGCATCGCTCACACAACACCTGATCCTGTACCCCGGCACATAGTTGGCTGGGTCAACCCCAGAGACACCTGGGAGACTTTCCTTCAGCAGCTAGggaagagggagaaaaacagtGAGAGTTACCCAGGCACAGCAGGACCATGTAAAAAGAGACAGCGGGTATCGATGACATCAGGCAAGGAATGTGAGCTTGAAACAGAGCTCGTTTGTGGAAGCCAGCACTTGTGCACAGGGGAATGCAGTTTGGTAGCTTATGCTGATGAGAATCCAGCTAGGTCTGTTCTTCAGCAACATGAAAGGGAAAGCAATGACTGTGTACCTCTGTCAGACACTGTGATGGAAGAACATCCTCTGGGATGGACTTCATCCATACATCCTGAGGTCTGTTCTAGTGTTAAAGAACCAACGTGCTCGGATTTTGTACTGACTGGACTTCATGCTTGCGGTGACCTTAGTGCTACTCTACTCCGCCATTTTGCTCATTGCCCCCATGTTCGAGGAATCACCTCTGTAGCATGCTGCTATATGAAAATCACTACCAAGGAAAACCCTACGCCTCCTGGAGTCATCCTCCCCTCTCTGTCTGATAACACAAATGAAGTATCCCAATCAGAATATGGCTACCCaatgagtgagtgggtgagacAGTTGCCTGGACACGAGCTATCCTATAAGGCCCGTGAGGGAGCATGCCATGCAGTCGAGGACTATCTTCATAGGTTGAGAGATGAGAGCTCATTACTGAAAACGCACTGCTACCGAGCGACCCTGGAGACCATCATCAGAGCAGAGAGGCCTCAGCTACGCAGAGCAGGCATCCAGACCATTAAAAAAGCCCATATGCTACCTTTCACAGAtgtagaaagaaagaaagctttttCCGCTCATGAGCCTGGGGGTTACCCTATAACCCTGTATATACTGACATGCCAGCTTCTAGGCAAGTGATCTGTGAAATGACTATATGGAAAATGTCCTTTCACAACCCTCCCCCCCATTGGAGTGACTGCATTTTTCATCTTcagggttggcagGTATGCCCGTCTGGGGCTCACCCGTGTTGGCTTGCCTGCTgacctgacctttgaccctgtcAGCGTGGAAGGCCTGCTGGAGCAGCAGGGCAGAGTGGTGGTATAT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12191 lncRNA downstream 43366 18783017 ~ 18783447 (-) True G10275
TU12058 lncRNA downstream 358877 18383588 ~ 18467936 (-) False sema6e
TU12067 lncRNA downstream 412405 18413706 ~ 18414408 (-) True G10166
TU12008 lncRNA downstream 465783 18360807 ~ 18361030 (-) True G10124
TU12005 lncRNA downstream 470861 18354911 ~ 18355952 (-) True G10121
TU12238 lncRNA upstream 7602 18839806 ~ 18840038 (-) True G10314
TU12418 lncRNA upstream 23321 18855525 ~ 18980359 (-) True G10461
TU12420 lncRNA upstream 48837 18881041 ~ 18888873 (-) False G10461
TU12415 lncRNA upstream 67218 18899422 ~ 18908394 (-) True G10460
TU12449 lncRNA upstream 164539 18996743 ~ 18998015 (-) True G10486
XM_026926534.2 mRNA downstream 66586 18756188 ~ 18760227 (-) True ctsk
XM_026926383.2 mRNA downstream 75353 18742043 ~ 18751460 (-) True LOC113533916
XM_026926457.2 mRNA downstream 125808 18695036 ~ 18701005 (-) True ensab
XM_026926549.2 mRNA downstream 133025 18691583 ~ 18693788 (-) True mcl1b
XM_026925942.2 mRNA downstream 163182 18654139 ~ 18663631 (-) True tmod4
XM_026926584.2 mRNA upstream 25344 18857548 ~ 18860680 (-) True hapln2
XM_026925950.2 mRNA upstream 152574 18984778 ~ 18991821 (-) False nes
XM_026925949.2 mRNA upstream 152574 18984778 ~ 18991821 (-) True nes
XM_026926553.2 mRNA upstream 166127 18998331 ~ 19002364 (-) True gpatch4
XM_026926412.2 mRNA upstream 215249 19047453 ~ 19071860 (-) False lmna
TU12167 other downstream 125827 18695054 ~ 18700986 (-) False ensab
TU11919 other downstream 630052 18188563 ~ 18196761 (-) False G10064
TU11932 other downstream 652247 18172187 ~ 18174566 (-) True G10068
TU10747 other downstream 2079262 16744702 ~ 16747551 (-) True id4
XR_003403482.1 other downstream 2326340 16498358 ~ 16500473 (-) True LOC113534214
TU12662 other upstream 710195 19542399 ~ 19547243 (-) False ccn4b
trnaq-cug_1 other upstream 844977 19677181 ~ 19677252 (-) True trnaq-cug_1
trnaq-cug_2 other upstream 848191 19680395 ~ 19680466 (-) True trnaq-cug_2
trnaq-cug_3 other upstream 851382 19683586 ~ 19683657 (-) True trnaq-cug_3
trnaq-cug_4 other upstream 854592 19686796 ~ 19686867 (-) False trnaq-cug_4

Expression Profile