G10068 (nop2,LOC107685519,LOC107749104,LOC107699935,LOC104957145)


Basic Information

Item Value
gene id G10068
gene name nop2,LOC107685519,LOC107749104,LOC107699935,LOC104957145
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 18172187 ~ 18174566 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU11932
TTTAgatgcattttaatgtttaaaagcaTGACAGGATCCACACAACTATAGCTGTTTTTAGCCAAATATCCAGCCTCATTTGTATCAAAGTTTATTTTGCCAATGTAACATGGCTACATAAAAATTGTAAAGAAcctaatataaattttaaatccagaattaaaaatgcatgtttCCACACAATATTTTTCCAAGAAGGTAAGGCAGAACATCTTATTCTTAAACCATTATTCTTACAAGTAAACCAAGACAATTTATTCACATGTTGTTTCCAGTATATTTATGCTTGGTTTTGACAGgaatagtaaataaaagttcAAGGTATAGCACATCCTAGAAGACATTAAAGTCCACAAGTATACACAATGTCTTAAGGAAGTTTTCTTGTTTCGTTATAAAAGCTCCATTCTACTGTCCAGCCTCCTGTTGCTTCAGCACATTTTTTAACTTCTTAAAtttgtttttccccattttattCTTCCTTCTTTGAAAGAGATTCTTCtgattctttttgtttgtcttctTCTTAAGCAAGCTTCCCTCTGCTTTCACAGTCACAGACTCATTTGTTATGTCTTTGTCCACTTTTAGGACTTTGAGCTTTTCTTTGGTCTTGACTTCCTTTGAATTCTGTTCATCCATTTTCGCCAATTTCTTTTTGGGACCTTCATCCTTTAATTTTTTACCTTTTACCACTGGCTTTTTCTTGGCAATGGGGCTTTCGGTTTTGCTGTTGCTAGTTGGTTTTGATTGTTGCTTAGTCTCTCTGGCTTTTCCTTGTGTACCTTTGCTCTGTTGCTTAGACTCTGGTTTCGAGTTTTTGTCCTCTGATGTAGCAGGTGTTTCTGTTTTGCTGGCGTTTTCGTTCTCTTCTGCGGGTGCAGTGGGAATGGTGTTAGAGAACTTCTTCAGCTTTGCCACAAAGAAGCCATCCATGTTGTGGGAATGTGGGTAGAACCTTCGAGACAGCTTAAGTGAAGGGTGGAAACGTCGCTCTTTAAATCTGGTGAAGCCTTCTTTGCCAAAGTCCAATCCTGTGGGAACCAGTTTTACATTTCTCTTCTTTAGGGCATAATCCACAACCCACTCGTTCTCTTCCACCGTAATAGAGCAGGTGCAGTAGACAAGATAACCACCCGTCTGAGAGTCAGCATTGACTGAGTCAATGGCAGCCAGAATCAGCTCCTTCTGTAGATGAGCTGAGCGCAGAATATCGGAATTGTCCTAATAGGCAGAGGGATAAGCAATTATTCAAGGCAAATGTGTTTCTTTCATACTCAAAATGGAAAATGCTGTACATTGTGAGTTCATTGCATGCTCTTCGAGCAGCATTAAAACCTAATATGTAATAGCTGATATGATCATTTAAATTTCccccaaattaaaaaaaaaatgaaatgatggaaAATGTTGGAAAAGTAAAAGCACCAGCTGTTCCAATGGGGCAGAAATAATGAGGGTTACAAATCATGAGACATTATTTCTTGCAATGCACCAATCCAAAGCCATTTTAAATGATAAGTATCTGTCAATACCTGGTACTAACTTTTCAATAATAACATACTAAGCAACTACATTATGTGAAACATCAC

Function

symbol description
nop2 Predicted to enable rRNA (cytosine-C5-)-methyltransferase activity. Predicted to be involved in maturation of LSU-rRNA and rRNA base methylation. Predicted to act upstream of or within RNA processing; methylation; and ribosome biogenesis. Predicted to be active in nucleolus. Is expressed in several structures, including digestive system; mesoderm; nervous system; neural tube; and pectoral fin. Orthologous to human NOP2 (NOP2 nucleolar protein).

NR:

description
PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU11932 True 1592 TUCP 0.37 4 18172187 18174566

Neighbor

gene id symbol gene type direction distance location
gtf3c6 gtf3c6 coding downstream 7052 18163640 ~ 18165135 (-)
fam131bb LOC108268385,LOC108429024 coding downstream 53684 18093724 ~ 18118503 (-)
arhgef5 LOC108268405,LOC107699944,LOC107748790,LOC107744673,LOC107685510,LOC107596678 coding downstream 125022 18031588 ~ 18047165 (-)
si:dkey-87o1.2 NA coding downstream 184561 17983058 ~ 17987626 (-)
them4 LOC108272246 coding downstream 196408 17968854 ~ 17975779 (-)
cd27 NA coding upstream 45560 18220126 ~ 18227619 (-)
LOC113533828 NA coding upstream 81056 18255622 ~ 18259003 (-)
rpl18 rpl18,LOC107748941 coding upstream 94488 18269054 ~ 18274724 (-)
si:ch211-120k19.1 LOC108268252 coding upstream 101781 18276347 ~ 18280362 (-)
myh14 LOC108272574,LOC108429041 coding upstream 112516 18287082 ~ 18323624 (-)
G10070 NA non-coding downstream 2846 18127968 ~ 18169341 (-)
G10069 NA non-coding downstream 3425 18168329 ~ 18168762 (-)
G10066 NA non-coding downstream 11470 18153390 ~ 18160717 (-)
G10035 LOC108268386 non-coding downstream 78539 18092774 ~ 18093648 (-)
G10057 NA non-coding downstream 82015 18089561 ~ 18090172 (-)
G10081 NA non-coding upstream 22407 18196973 ~ 18197288 (-)
G10082 NA non-coding upstream 22752 18197318 ~ 18198033 (-)
G10083 NA non-coding upstream 23561 18198127 ~ 18198346 (-)
G10121 si:dkey-27n14.1,LOC108263335,LOC108428912,LOC107749301,LOC107685608,LOC107596760 non-coding upstream 180345 18354911 ~ 18355952 (-)
G10124 NA non-coding upstream 186241 18360807 ~ 18361030 (-)
gask1a fam198a other downstream 775214 17377902 ~ 17396973 (-)
id4 id4 other downstream 1424603 16744702 ~ 16747584 (-)
cremb LOC108269046,LOC105019435,LOC108428923 other downstream 1621544 16533589 ~ 16550643 (-)
grik2 grik2,LOC108271497,LOC101466412 other downstream 2486042 15539126 ~ 15686145 (-)
G8271 ppp1r8 other downstream 3032319 15137000 ~ 15139868 (-)
G10064 NA other upstream 13997 18188563 ~ 18196761 (-)
sema6e sema6c,sema6e,LOC108429044,LOC107587820 other upstream 209022 18383588 ~ 18507523 (-)
ensab ensab,LOC108268136,LOC108441925,LOC103045558,LOC107741750,LOC107587831,LOC107663348,LOC107597988,LOC107732479 other upstream 520470 18695036 ~ 18701005 (-)
rrnad1 rrnad1 other upstream 650815 18825381 ~ 18832204 (-)
ccn4b wisp1,wisp1b,LOC107714595,LOC107724778,LOC107587903,LOC107552812 other upstream 1367793 19542359 ~ 19547501 (-)

Expression


Co-expression Network