gpatch4 (gpatch4)


Basic Information

Item Value
gene id gpatch4
gene name gpatch4
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 18998331 ~ 19002364 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926553.2
gtcgtgattggctagtgtgaGTGTGACGTCAGCTGAGAAGCCGTATCTACACTTCCGGTGTCATGTCTGCACACACGTGGAGTTGACGGTATATTAGACTACagaggtttattttattaactgtgTGTAACAGAGTAGTTCTGCCATGATGGTTGGcttgttcagtgtttgtgtttacagactGAGTTGATTTATAGCAGTAAATACCGGTATAGAGTGAAACAGCGTGTGCTGACTAGCTACCGAGGCAGAAGTAAGTAGTtgggttattttattttttgctctggTAACTAGCAGTATGTCAGAAGCAGCACCGGAGAAGAGCCGTGGACTGAAATTTGCTGAGCAGCAGCTTCTGCGTCACGGCTGGGAGCAAGGTAAAGGTCTAGGAAGAGCTGAGAACGGCATCTCTGAAGCAATCAGAGTTAAAGTGAAATGTGACAAAGGAGGGGTTGGCCATAAAGAAAGTGAGCAGTTCACTTTTCACTGGTGGGATCATGTGTTTAACAAGGCATCCGCCAGTTTAGCTGTGGAATCAGACCAGAATGGGGTGATGgtgaagaaaatggaggaagaagaggTTGGAATGATTTCTAACAAGAAGCCTCGAAAGGCCATGATGAACAAGTCTATGCTCTATGGATGCTTTGTCAAGTCTGCTACTCTCCTCTCAGGACAGGAACAGCCTGAACAAAGCTCGTCTGCCTCAGAGGACAGTAGCTCTGAGGATGAAGAGAAGCTAGACCTTTCCAGCACCAAGAAACTATCTGATGCAGAACTGATGAAAGCATGTGGAGGACGCACTGCACATAAAGGTGCCAGACATGGTCTCACGATGAGTGCCAAACTAGCCAGACTGGAGCAACAAGAGCAGGAGTTCATGGCAAAATATGGAAAGAAGAAGCAGATAGACAAAACCACAGCTCTGAGTGAAGCAGCGCCCACTGAGCTTAGTTCTGCATTAGACCAGGAGAGGGTAGACAAGCCCGAACGGAAAAAAGCCAAGAAAAAGAAGCAGCGTTCAGATGAGCCCAAAGATAATGGTGTCCAAGAAAGCACTGAAGCTTCACAGGAGCACAATGAGGAGCTATCAAAAAAGcgaaaaaaacagtcaaaagtCAAAGCAGATTTAAAATCAGAAGATATAACTGATTCTTTTGTGAACACTgatacaaagaaaaagaaaaaaaagaccaaactGGTGCTGGAAGAGGAAAGTACAGAGATGGTGCAGGAAGGTGAAGTGGCAGAGACTGCTGAACATCAACCAACAGATGAAAGTGTCTccaaaaagaagaggaaaaagaagaaatgctcTGAAAAAAGCAGTGCTCTGGAGGAAGGACAGAGTAAGAACACTGTGCTGGCCAGTGAGGAGTCTGCTGAAACTACAGAGAGTCATGAACGTGAGCAGCAGGAAGAGGGCACTGCTGCACTGAACCCAACACCTGATGGCTAcaagaaggagaaaaggaagTCCTCCAAGGCCAAAAAAGACAAGTCGCCAGCTACAGAAACAGACAGCTGCTATAGTTTAGACGCCAGCACAGCAGAGATTGTGGAAACAGCTGATGTAGAGAAAGAACCATCACAatcaaaaaaaaggaaaagcagaGAAGAGGAACTGGAGGCAGAGACTGAGAATAGATCAACAGATAAACCAgctgaaaagaagaagaagaagaaaaagaagcctGCAGAGTGATGTTTTTCTGGTGAATTATATAAAAGTGATGCCATGTTGAACTTGGGGGCTTAAAGATATAGTATTGACTTTCCTCAGTGTTCACTAGAAACACAACAATTATGCacattcactgtccactttattaggaacacctgcacattcatgcagttatctaatcagccaatcatgtggcagcagtggaatacataaaat

Function

symbol description
gpatch4 Predicted to enable nucleic acid binding activity. Orthologous to human GPATCH4 (G-patch domain containing 4).

NR:

description
G patch domain-containing protein 4

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926553.2 True 1900 mRNA 0.44 7 18998331 19002364

Neighbor

gene id symbol gene type direction distance location
nes nes coding downstream 6510 18984778 ~ 18991821 (-)
hapln2 hapln2 coding downstream 137651 18857548 ~ 18860680 (-)
ctsk catk,ctsk,LOC108441922 coding downstream 238104 18756188 ~ 18760227 (-)
LOC113533916 ctss coding downstream 246871 18742043 ~ 18751460 (-)
mcl1b LOC108268142,LOC100304882 coding downstream 304543 18691583 ~ 18693788 (-)
lmna lmna,LOC107598000,LOC107671682,LOC107704890,LOC107587813 coding upstream 45089 19047453 ~ 19071860 (-)
mc5rb mc5rb,LOC108267943,LOC108410772,LOC107704891,LOC107741731 coding upstream 82818 19085182 ~ 19091614 (-)
ldlrad4b LOC108267967,LOC108410774 coding upstream 102708 19105072 ~ 19180556 (-)
ptk2ab LOC108267913 coding upstream 179755 19182119 ~ 19249821 (-)
slc45a4b LOC108267890 coding upstream 261764 19264128 ~ 19271498 (-)
G10486 NA non-coding downstream 316 18996743 ~ 18998015 (-)
G10461 NA non-coding downstream 17972 18855525 ~ 18980359 (-)
G10460 NA non-coding downstream 89937 18899422 ~ 18908394 (-)
G10314 NA non-coding downstream 158293 18839806 ~ 18840038 (-)
G10275 NA non-coding downstream 214884 18783017 ~ 18783447 (-)
G10581 NA non-coding upstream 350689 19353053 ~ 19353263 (-)
G10583 NA non-coding upstream 358940 19361304 ~ 19361511 (-)
G10630 NA non-coding upstream 464576 19466940 ~ 19467159 (-)
G10702 NA non-coding upstream 601054 19603418 ~ 19603760 (-)
G10716 NA non-coding upstream 635275 19637639 ~ 19637870 (-)
rrnad1 rrnad1 other downstream 166127 18825381 ~ 18832204 (-)
ensab ensab,LOC108268136,LOC108441925,LOC103045558,LOC107741750,LOC107587831,LOC107663348,LOC107597988,LOC107732479 other downstream 297326 18695036 ~ 18701005 (-)
sema6e sema6c,sema6e,LOC108429044,LOC107587820 other downstream 490808 18383588 ~ 18507523 (-)
G10064 NA other downstream 801570 18188563 ~ 18196761 (-)
G10068 nop2,LOC107685519,LOC107749104,LOC107699935,LOC104957145 other downstream 823765 18172187 ~ 18174566 (-)
ccn4b wisp1,wisp1b,LOC107714595,LOC107724778,LOC107587903,LOC107552812 other upstream 539995 19542359 ~ 19547501 (-)
trnaq-cug_4 NA other upstream 684144 19686508 ~ 19686867 (-)
trnaq-cug_5 NA other upstream 687629 19689993 ~ 19690064 (-)
trnaq-cug_6 NA other upstream 690795 19693159 ~ 19693230 (-)
trnaq-cug_7 NA other upstream 694001 19696365 ~ 19696436 (-)

Expression


Co-expression Network