RNA id: XM_026926669.2


Basic Information

Item Value
RNA id XM_026926669.2
length 3054
RNA type mRNA
GC content 0.38
exon number 6
gene id cd27
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 18220126 ~ 18227619 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTCTCCTCTggcttctctgtttttctctcactaCCCAAAACATGCAGATGCTGATCTCGTGGTGTTGTTTCCTTCTTTTGTCACATTTCCTTTGTCATGTCCATCCAAAGGAGTGTAACAATACGTATGAATATGAAGGTGAAAATATACATTGCTGCAAGAAATGTGGACCAGGTGAACGCATGGATAAGAGATGTACAAAAGACTTCGATACGAAATGTAAACAATGTACTCCTGACTTCTTCATGGATGAATTCAGTACGGAAATGGAATGCAAAAGGTGCTCTCAATGTACAAAAGAACACATGGTGTATAAGGTGAACTGCTCTCACAgcactgatgcagtgtgtggcTGCGAGAATGGATATGAATGCCCCAGTAATTCATGCACAgactgtgtgaaaatcccaacaacaacaccacgaccaacaccaacaccatcaacaacaacaataacagtaatctcaaaaaatgtcaaaaaaaatgaGCAGCAAACAATACCCTCCGAAGACATTGTGTGGATCACTCTgagtctgtgttgtgtgtgcattCTGCTTACCTGTTTCATTCTCATCAGCAGACACACAACTCCATGTGGATGGCCCATGTTGGCTTCAGCTGGTTTTTTTGGGGGACCCAAGAAAACTTTTGGGGTATCCAGTCAGTGCACAGAAGATGAGGAAGTGCCGATGCCGGTCCAGGAGGTGTGTGGATATAAAGACTGGCAAGAAGAAGCCTGAGGGAGACAGAGGGAAGTGGCAAGAACGAGGCAGGAAAAGGCACTTAAGAGTGTGGATTGACTATAAACTGTAACACAGGCTTATGAAAGGAGGAGCAAGAGACACACTCTTTCTGCACCCAAACTAATGGGATACTGAGAGAGAAGGGAAAGGATAGACACCCCATAAGTCCACTGTATAGCACAATTCAACTATTTAATACTCCAGTGAAACAGGGCCTCAAGTCTAATTTAATATCACATTTTACAAAAGGAGGTGGCACAGTGTTTGGTCCTGAGTgcgggttactgcctgtgtggagttcttTTCGTGTCCTTGTGTCTTTCCTCCAGATTCTCCATTTAccacccacctcccaaaaacatgaatGCAGATGGATTGGTTttgataaattgcccctagacgTGAATGTTTGTGcaccctgcaatggactggagtaccatccaggatgtattcctgcctcactctCAGTGTTCCCACAATACTTCCTGGATTTatggttattgaagatgaacaaatgatttttttaaaatagctacattcatttgtttgtactAATGGAttgattttaaaacaaaattcaatCATATTAACAAAGGTGAAAtgctctggattttttttttcttccattttttggAAAGCTTACTGTCTatatttttaggatttttagaattattattgTTCGTATAGATAGTTGTTTTCACTCTATGTGAAAGGTGTGATTGTTAGTAGTTGGCCCAAGCAAAggaagtttaataataataatacttccACATGGGAGTCTATAGCAGCCCACAGAAAACTTCGTAagctttttatgaaatttgaCACAGCAATTTTGTTGTACACCACTGAAGCGCTCTAGTGCCACCAACAGGGCAAAGTATGACAAACGTTTGCAATAATAACTCCGAAACCCAACGTCATAGAAATGTCAATTCTTTCGTCCTCTGATTCTTTTCGTTATGCCAAGTTCAAGCTTCTTCTACAAATTTGTCCACTCAATATGCAAAGAGGTTTTCTAGTGAAGtcctcaaacaggaagtgagggcatatctAAGTATATCCCAGCATTCAGACCAAAAGCTGCACATGAATGAAGGACCAGGACCTAAGGACCTGAAAACTCCAAAAAGTTTTGTCTAAATTCACCTCTAGGTAGTGCtataattcacaaattataaaacTGCTCATAACCTTTGAACTGCTCAACACAACATCAAAGCAAAAATGATTCTTCTTTCTGTTGcaacaaacaggaagtaggCCAAATTGAGttttaacaaaaccatttttttcacttactgTCATACAAATTTCGTAAAATCATCACAAAATTTTGGTCACAGCATAGTGAGACCCACCCGAACACAACTTGCTCCTCCGATTTTTGATATGTGGAATGGTCCATCCATAAAGTGCAAACGAATTTGACAGCAAAGTCACCAAACTGGAAGTGAAGCCATTACTCAGCAACGCTTTTAAGTATTGAAAACAGACTTTGCACATATGATTAGCAGTATGACctaatgttaacaaataaacaaacttcAAGTTAATTTGCAACTTGGGAGGGCTAATGAAAAGTGGAAGCGAGGCAATAGGCTTAAAATATTGACATCAAGTTTAGTATATTTCCTTGTACTAAGAAACTACTGTCCtacaccattttttaaaataaatacaatagaagcaaaaagaacagaaaatgcCACGTTTCAGGCTGGAACACTGCTGTTGTATGGCAAGGAAGTACTTGGAGTTTGATAACTGCATGCCTTATTCCATTGGTGATCTTTGACCATCTGGATTTTTATAGTAATAGAATCCATGATGCTGTCTGTATTCACCAGTTTAGAAAATTGATACAAATGTGTTCAGTAGTTCACTAGTACCTAACTCATTGTCAATTAGGCTTTCTAGAAGGTTATCCATTGTAAAATTGTACAGTAAAAACTGCAATGCTATTATCCCTAGAccctgttagctagctgtgtAGAGATGCTGGtgtgtactatactatatttgATTCTGAGtacaataaattatattaagttATCCATACTATATACTGAGAATTTTGTTtatgggttttttgtttgtttgtttggtcgGTTGTTTTGTTGTGGGAAAAACttgattaaaaaatttaaatgccaTATGTATTTCATATAAACGATGTAAACCTTTATTCATTGCTActgtattaaatgaaaaattacatCTATATTTCTTCTTATGAacatatacaatattatatacagtacctgtgtaataatgaaaaatgtttaggtTTAATAAAATATGGTGGGA

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11947 lncRNA downstream 21780 18198127 ~ 18198346 (-) True G10083
TU11946 lncRNA downstream 22093 18197318 ~ 18198033 (-) True G10082
TU11945 lncRNA downstream 22838 18196973 ~ 18197288 (-) True G10081
TU11913 lncRNA downstream 23441 18188563 ~ 18196685 (-) True G10064
TU11916 lncRNA downstream 23441 18192134 ~ 18196685 (-) False G10064
TU12005 lncRNA upstream 127292 18354911 ~ 18355952 (-) True G10121
TU12008 lncRNA upstream 133188 18360807 ~ 18361030 (-) True G10124
TU12058 lncRNA upstream 155969 18383588 ~ 18467936 (-) False sema6e
TU12067 lncRNA upstream 186087 18413706 ~ 18414408 (-) True G10166
TU12191 lncRNA upstream 555398 18783017 ~ 18783447 (-) True G10275
XM_026926504.2 mRNA downstream 54991 18163640 ~ 18165135 (-) True gtf3c6
XM_034303397.1 mRNA downstream 101623 18093724 ~ 18118503 (-) False fam131bb
XM_026926197.2 mRNA upstream 28003 18255622 ~ 18259003 (-) True LOC113533828
XM_026926888.2 mRNA upstream 41435 18269054 ~ 18274724 (-) True rpl18
XM_026926807.2 mRNA upstream 48728 18276347 ~ 18280362 (-) False si:ch211-120k19.1
XM_026926806.2 mRNA upstream 48728 18276347 ~ 18280362 (-) True si:ch211-120k19.1
XM_034309424.1 mRNA upstream 59463 18287082 ~ 18323624 (-) True myh14
TU11919 other downstream 23365 18188563 ~ 18196761 (-) False G10064
TU11932 other downstream 45560 18172187 ~ 18174566 (-) True G10068
TU10747 other downstream 1472575 16744702 ~ 16747551 (-) True id4
XR_003403482.1 other downstream 1719653 16498358 ~ 16500473 (-) True LOC113534214
TU9776 other downstream 3080258 15137000 ~ 15139868 (-) True G8271
TU12167 other upstream 467435 18695054 ~ 18700986 (-) False ensab
XR_004579128.1 other upstream 599194 18826813 ~ 18832204 (-) False rrnad1
TU12662 other upstream 1314780 19542399 ~ 19547243 (-) False ccn4b
trnaq-cug_1 other upstream 1449562 19677181 ~ 19677252 (-) True trnaq-cug_1
trnaq-cug_2 other upstream 1452776 19680395 ~ 19680466 (-) True trnaq-cug_2

Expression Profile