LOC113534155 (pl8l1,LOC107755659,LOC107588526,LOC106583166,LOC107700712,LOC107704880,LOC107705924)


Basic Information

Item Value
gene id LOC113534155
gene name pl8l1,LOC107755659,LOC107588526,LOC106583166,LOC107700712,LOC107704880,LOC107705924
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 14542769 ~ 14545317 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU9502
CCACTATGAACTTTGTAGAGAGCTTCGGAAACATTGCAGGCGGGGTTGGTGTCACAACTTCCTTTTGTGCGCAAAGATTTAGATTGAGAGGCTCGAGGGTAGCAGACGAGAGCACACCAGTTCATCGACATGTCAAACCCAGTCATTACTCATCAGCCGGGTGCAGCCTCCTACGGCACTAATGTGCAGACAGGAGAGTGGAGCACTGGCCTCTGCTCCTGTTGTAGCGACCTGCTCGTCTGTGCTCTTGGTTGCATCTGTCCGATTGCACTGAGCTGCTACACAGCAAACAAGTATGGTGAGAATGCATGCCTAGCATGTGTTCCTGGAGGCATGGCCGCTATGAGGACACACATGAGACTGACCTACGGCATCCAAGGTACAATATGCAATGATGCCCTGATGACCTGCTGCTGTGGAATATTTGAGACATGTCGAATGGCCAGAGAAATTCGTATTAGAAATGGAGAGGCCTAATTAGGTAATACTACTGTGACTGTGCTTTGTAGCAGAGAAACCCCATCACTGCAGGCTATAGATTTGTATTGTCCTTTCTTTTGTAACAGGACAATCAACtggatttgatttgatttgatttgatttattgtaCCAAATATATTCAATAACACCTTCAAAATGTAATGGTCTAAGTTAAATGTGtagcaatctttttttttttttttctttgacatctctactttaagaaaacataatatattttaccaaatcaATATGAAAATGTTCCACGCTGTACAGATAACATTGGATGAAGttttaaaaaggtttaatgacctaataaataaacattaataaacagaaC
>XM_026926782.2
ATTGCCTCCTCCTCTTATGATCAAGCCACTATGAACTTTGTAGAGAGCTTCGGAAACATTGCAGGCGGGGTTGGTGTCACAACTTCCTTTTGTGCGCAAAGATTTAGATTGAGAGGCTCGAGGGTAGCAGACGAGAGCACACCAGTTCATCGACATGTCAAACCCAGTCATTACTCATCAGCCGGGTGCAGCCTCCTACGGCACTAATGTGCAGACAGGAGAGTGGAGCACTGGCCTCTGCTCCTGTTGTAGCGACCTGCTCGTCTGTGCTCTTGGTTGCATCTGTCCGATTGCACTGAGCTGCTACACAGCAAACAAGTATGGTGAGAATGCATGCCTAGCATGTGTTCCTGGAGGCATGGCCGCTATGAGGACACACATGAGACTGACCTACGGCATCCAAGGTACAATATGCAATGATGCCCTGATGACCTGCTGCTGTGGAATATTTGAGACATGTCGAATGGCCAGAGAAATTCGTATTAGAAATGGAGAGGCCTAATTAGGTAATACTACTGTGACTGTGCTTTGTAGCAGAGAAACCCCATCACTGCAGGCTATAGATTTGTATTGTCCTTTCTTTTGTAACAGGACAATCAACtggatttgatttgatttgatttgatttattgtaCCAAATATATTCAATAACACCTTCAAAATGTAATGGTCTAAGTTAAATGTGtagcaatctttttttttttttttctttgacatctctactttaagaaaacataatatattttaccaaatcaATATGAAAATGTTCCACGCTGTACAGATAACATTGGATGAAGttttaaaaaggtttaatgacctaataaataaacattaataaacagaa

Function

NR:

description
plac8-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU9502 False 820 TUCP 0.41 4 14542769 14545292
XM_026926782.2 True 844 mRNA 0.41 4 14542770 14545317

Neighbor

gene id symbol gene type direction distance location
oscp1b oscp1,LOC108269545,LOC107755648,LOC107700711,LOC107705542,LOC107704985,LOC103033623,LOC107588491 coding downstream 5745 14525236 ~ 14537024 (-)
LOC113533985 tmem65,LOC108271490,LOC108429253,LOC106511649 coding downstream 28688 14473422 ~ 14514081 (-)
LOC113533712 e2f3,LOC108429255 coding downstream 122096 14409174 ~ 14420673 (-)
LOC113534032 NA coding downstream 137847 14394465 ~ 14404922 (-)
cdkal1 cdkal1,LOC107722243 coding downstream 153239 14124514 ~ 14389530 (-)
mrps15 mrps15 coding upstream 318 14545635 ~ 14556660 (-)
csf3r csf3r coding upstream 13064 14558381 ~ 14572856 (-)
LOC113533978 grik3,LOC100334689,LOC105019312,LOC102778608,LOC106605119 coding upstream 228548 14773865 ~ 14879622 (-)
LOC117598409 LOC108280105 coding upstream 470601 15015918 ~ 15018356 (-)
LOC113533882 maneal coding upstream 533169 15078486 ~ 15086762 (-)
G8011 NA non-coding downstream 2244 14540323 ~ 14540525 (-)
G7971 NA non-coding downstream 133693 14407919 ~ 14409076 (-)
LOC113534047 NA non-coding downstream 490079 13963752 ~ 14052690 (-)
G7691 NA non-coding downstream 502941 14038448 ~ 14039828 (-)
G7596 NA non-coding downstream 579172 13959534 ~ 13963597 (-)
G8054 NA non-coding upstream 123540 14668857 ~ 14670707 (-)
LOC113533890 NA non-coding upstream 480373 15025690 ~ 15028926 (-)
G8203 mtf1 non-coding upstream 510341 15055658 ~ 15056179 (-)
LOC113533884 mtf1 non-coding upstream 516232 15061549 ~ 15071548 (-)
G8220 NA non-coding upstream 526293 15071610 ~ 15072017 (-)
nrsn1 nrsn1 other downstream 657174 13875700 ~ 13885595 (-)
LOC113534113 adamts16 other downstream 1271783 13238335 ~ 13270986 (-)
rprd2b LOC108265649 other downstream 1306820 13216353 ~ 13235949 (-)
cers2b LOC100304753,LOC108410638 other downstream 1422812 13106460 ~ 13119957 (-)
tmem14cb LOC108263890 other downstream 1514677 13024527 ~ 13028092 (-)
G8271 ppp1r8 other upstream 591683 15137000 ~ 15139868 (-)
grik2 grik2,LOC108271497,LOC101466412 other upstream 993809 15539126 ~ 15686145 (-)
cremb LOC108269046,LOC105019435,LOC108428923 other upstream 1988272 16533589 ~ 16550643 (-)
id4 id4 other upstream 2199385 16744702 ~ 16747584 (-)
gask1a fam198a other upstream 2832585 17377902 ~ 17396973 (-)

Expression


Co-expression Network