mrps15 (mrps15)


Basic Information

Item Value
gene id mrps15
gene name mrps15
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 14545635 ~ 14556660 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926781.2
GTGGCGGTAAAGGGTTCAGGGCTGTCACGTGACCGCTACAGacgcagaagaagaaaaaagatggcTGCGTCCGTTCACTGAGGGGGACAAATACACGTTTAGACTATTACTGACTACATAATAGACATCTGCAAagacaatgtttttaaatcacagCCTGAAATCAACGGCGACGGCTGTACGAACATGGCGCGTGCTGTCGGGTTTGAAGCACGGCAGTGTTCCGTCACACGGCCACTGCAGCTCCAGGGGACAGCGCTATGTTCACTTCACCGGGATGGCGACTCGTTCACTTAAAAGTAATGAAACCCTCACAAGCCAGTCAGTGAGACAATATGCCCGAGCTGTACAAAAAAAGCCAGAATTTCAGAGTCAGCTACAAGACCTGCCACCTTCAATGCTGAAGCATGAATATGCTTCTGTTCCACTGGCTCACACAGTTGACGATGTGGTGAAGAAGCTTCTCTCACTGGAGCTTGCAAGTCACAGTGAAAAACTGCGCCTGAAAGAGGAACAGCTGATTGGAAAGGTCCAGAGGCATGAAAATGACCGAAGCTCAACAGAGGTTAAGGTGGCCGTGTTGACAGCACGAATACGCAATTTTCAGGAGCATTTGCAGAAGCACCCTAAGGACAAAGCTAACAAGAGGTGGATGCTGATGAGCATTGACCGCAGGAAGAAATTGCTCAAGTACTTGAGAAGGTCACGATATGATGCTTTTGAGAAGGTCTGTGCAGAGCTAGAGATCACATACACCTTCCCTCCAGAGTACTACAGACGGGCAACCCGGCGCTGGCTGGCTAAGAAAGCCCTCTGCATCAAGGTTTTCAAAGAGGTCCAGAAACAAAAGGcagagaagagaaataaagctcTCGCTCATAAGAAGGCTAGGAGCACAAGCTCTAACCTCACAGAAACCCAGGGCACTCCAGTATAATAAAATCCACCATAACATATATTATTGTACAGGAAACTCATGCAGCATAACCACATCTAATAAACAGTCAGAGATATAGATACTGAAGATTATGGCATCTTGTGTTTTCTGTTGgaattgtacatttttaagcTTTACCAAATCTGATgtgttctttatttgttttgatttatgataaacattaataaaagtgggaaaagtaaatatttaaa

Function

symbol description
mrps15 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Orthologous to human MRPS15 (mitochondrial ribosomal protein S15).

NR:

description
28S ribosomal protein S15, mitochondrial-like

GO:

id name namespace
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
K02956 RP-S15, MRPS15, rpsO; small subunit ribosomal protein S15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926781.2 True 1149 mRNA 0.45 8 14545635 14556660

Neighbor

gene id symbol gene type direction distance location
oscp1b oscp1,LOC108269545,LOC107755648,LOC107700711,LOC107705542,LOC107704985,LOC103033623,LOC107588491 coding downstream 8611 14525236 ~ 14537024 (-)
LOC113533985 tmem65,LOC108271490,LOC108429253,LOC106511649 coding downstream 31554 14473422 ~ 14514081 (-)
LOC113533712 e2f3,LOC108429255 coding downstream 124962 14409174 ~ 14420673 (-)
LOC113534032 NA coding downstream 140713 14394465 ~ 14404922 (-)
cdkal1 cdkal1,LOC107722243 coding downstream 156105 14124514 ~ 14389530 (-)
csf3r csf3r coding upstream 1721 14558381 ~ 14572856 (-)
LOC113533978 grik3,LOC100334689,LOC105019312,LOC102778608,LOC106605119 coding upstream 217205 14773865 ~ 14879622 (-)
LOC117598409 LOC108280105 coding upstream 459258 15015918 ~ 15018356 (-)
LOC113533882 maneal coding upstream 521826 15078486 ~ 15086762 (-)
smpdl3b smpdl3b coding upstream 557779 15114439 ~ 15117872 (-)
G8011 NA non-coding downstream 5110 14540323 ~ 14540525 (-)
G7971 NA non-coding downstream 136559 14407919 ~ 14409076 (-)
LOC113534047 NA non-coding downstream 492945 13963752 ~ 14052690 (-)
G7691 NA non-coding downstream 505807 14038448 ~ 14039828 (-)
G7596 NA non-coding downstream 582038 13959534 ~ 13963597 (-)
G8054 NA non-coding upstream 112197 14668857 ~ 14670707 (-)
LOC113533890 NA non-coding upstream 469030 15025690 ~ 15028926 (-)
G8203 mtf1 non-coding upstream 498998 15055658 ~ 15056179 (-)
LOC113533884 mtf1 non-coding upstream 504889 15061549 ~ 15071548 (-)
G8220 NA non-coding upstream 514950 15071610 ~ 15072017 (-)
LOC113534155 pl8l1,LOC107755659,LOC107588526,LOC106583166,LOC107700712,LOC107704880,LOC107705924 other downstream 318 14542769 ~ 14545317 (-)
nrsn1 nrsn1 other downstream 660040 13875700 ~ 13885595 (-)
LOC113534113 adamts16 other downstream 1274649 13238335 ~ 13270986 (-)
rprd2b LOC108265649 other downstream 1309686 13216353 ~ 13235949 (-)
cers2b LOC100304753,LOC108410638 other downstream 1425678 13106460 ~ 13119957 (-)
G8271 ppp1r8 other upstream 580340 15137000 ~ 15139868 (-)
grik2 grik2,LOC108271497,LOC101466412 other upstream 982466 15539126 ~ 15686145 (-)
cremb LOC108269046,LOC105019435,LOC108428923 other upstream 1976929 16533589 ~ 16550643 (-)
id4 id4 other upstream 2188042 16744702 ~ 16747584 (-)
gask1a fam198a other upstream 2821242 17377902 ~ 17396973 (-)

Expression


Co-expression Network