RNA id: TU257056



Basic Information


Item Value
RNA id TU257056
length 1044
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G224821
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11617251 ~ 11618294 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tcaatgtaaatagccttatggtctgtgaggggagtagtacaaatatttgtagtaacacaCTCACTATCAATACATTTGGATATAAGCCAAAAATATATTCTGGATTGTCTGGAACCTGTTTTGTTACTCCAAGTGAATGATCTTTCGGCcggaaacctctctctccatatatcagtAAGATCAAACTTTTCCATAAAAAGTATTAAACCCACATTCTGATTGGTTGGCCTACCTGGGGGCCATCTATCAGTTGAATTATCTATTGTAATGTTAAAGTCCCCTCCTATCAATAATAACAAATTGGGAAATTTAGATAACCAATGAAGTATATGTTTCTCTATAGATTCAAgcaactcatcattctcatgtttggtgttgtaccagtagaagtttacagtaatgagtgtaatgtcattgtaactgatcattctcatgtttggtgttgtaccagtagaagtttacagtaatgagtgtaatgccattgtaactgatcattctcatgtttggtgttgtacccgtagaagtttacagtaatgagcgtaatgtcattgtaactcatcattctcatgtttggtgttgtaccagTAGAAGTTgacagtaatgagtgtaatgtcattgtaactgatcattctcatgtttggtgttgtaccagtagaagtttacagtaatgagtgtaatgccattgtaactgatcattctcatgtttggtgttgtacccgtagaagtttacagtaatgagcgtaatgtcattgtaacttatcattctcatgtttggtgttgaacccgtagaagtttacagtaatgagcgtaatgtcattgtaacttaTCATTCTCATGTTTTGTGTTGTGCcagtagaagtttacagtaatgagtgtaatgtcattgtaactgatcattctcatgtttggtgttgtacccgtagaagtttacagtaatgagcgtaatgtcattgtaactgatcacaagacaaataaagtgaccaaaggggtcacattccgagtgtagaatattaccaccaaaggtatTTTTCATTGTAGTGACAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU257057 lncRNA downstream 246 11616452 ~ 11617005 (-) True G224822
TU257022 lncRNA downstream 28283 11580307 ~ 11588968 (-) True G224795
TU257015 lncRNA downstream 41726 11575163 ~ 11575525 (-) True G224788
TU257010 lncRNA downstream 47491 11569535 ~ 11569760 (-) True G224783
TU257005 lncRNA downstream 50737 11565287 ~ 11566514 (-) True G224779
TU257034 lncRNA upstream 28216 11646510 ~ 11659065 (-) True G224800
TU257040 lncRNA upstream 34969 11653263 ~ 11654318 (-) True G224806
TU257029 lncRNA upstream 36585 11654879 ~ 11673200 (-) False G224797
TU257028 lncRNA upstream 50555 11668849 ~ 11693327 (-) False G224797
TU257031 lncRNA upstream 50555 11668849 ~ 11693327 (-) True G224797
XM_021590257.2 mRNA downstream 2413 11613213 ~ 11614838 (-) True LOC110509335
XM_021590216.2 mRNA downstream 68510 11503867 ~ 11548741 (-) False fam131bb
XM_021590547.2 mRNA upstream 108990 11727284 ~ 11737850 (-) False LOC110509576
XM_036969073.1 mRNA upstream 108990 11727284 ~ 11738035 (-) False LOC110509576
XM_036969079.1 mRNA upstream 108990 11727284 ~ 11738056 (-) False LOC110509576
XM_036969085.1 mRNA upstream 108990 11727284 ~ 11738056 (-) False LOC110509576
XM_021590439.2 mRNA upstream 157761 11776055 ~ 11779268 (-) True LOC110509520
TU256045 other downstream 338623 11275917 ~ 11278628 (-) False G223969
TU255996 other downstream 442884 11172120 ~ 11174367 (-) True G223942
TU255954 other downstream 543501 11070946 ~ 11073750 (-) False znf628
TU254793 other downstream 1594048 10020648 ~ 10023203 (-) False LOC110508724
TU257101 other upstream 109068 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 134557 11752851 ~ 11753680 (-) False G224869
TU257114 other upstream 134557 11752851 ~ 11753680 (-) False G224869
TU257115 other upstream 134557 11752851 ~ 11753680 (-) True G224869
TU257122 other upstream 177596 11795890 ~ 11796309 (-) True G224873

Expression Profile