RNA id: TU257089



Basic Information


Item Value
RNA id TU257089
length 246
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G224850
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11695615 ~ 11695860 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTCTTATCCCATTACTTTACTAgactgtgtgtattaggttttgttgtggaattgttagatattagctgttagatactgctgcactattggatctagaagcataagcatttctctacactcgcaataacctctgctaaccatgtgtatgtgaccaatacaattggatTGGATAAGAGAAGGTGCAAATTGAGAGGAACTTTGTGGATGTAGACTCACGTTGCTCATGAGGCCTTTGAAGAGCACCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU257087 lncRNA downstream 1900 11693480 ~ 11693715 (-) True G224848
TU257028 lncRNA downstream 2288 11668849 ~ 11693327 (-) False G224797
TU257031 lncRNA downstream 2288 11668849 ~ 11693327 (-) True G224797
TU257029 lncRNA downstream 22415 11654879 ~ 11673200 (-) False G224797
TU257034 lncRNA downstream 36550 11646510 ~ 11659065 (-) True G224800
TU257091 lncRNA upstream 6035 11701895 ~ 11702705 (-) True G224852
TU257077 lncRNA upstream 7061 11702921 ~ 11704140 (-) True G224838
TU257073 lncRNA upstream 10275 11706135 ~ 11708248 (-) False G224836
TU257074 lncRNA upstream 10275 11706135 ~ 11708248 (-) False G224836
TU257075 lncRNA upstream 10275 11706135 ~ 11708248 (-) True G224836
XM_021590257.2 mRNA downstream 80777 11613213 ~ 11614838 (-) True LOC110509335
XM_021590216.2 mRNA downstream 146874 11503867 ~ 11548741 (-) False fam131bb
XM_021590547.2 mRNA upstream 31424 11727284 ~ 11737850 (-) False LOC110509576
XM_036969073.1 mRNA upstream 31424 11727284 ~ 11738035 (-) False LOC110509576
XM_036969079.1 mRNA upstream 31424 11727284 ~ 11738056 (-) False LOC110509576
XM_036969085.1 mRNA upstream 31424 11727284 ~ 11738056 (-) False LOC110509576
XM_021590439.2 mRNA upstream 80195 11776055 ~ 11779268 (-) True LOC110509520
TU256045 other downstream 416987 11275917 ~ 11278628 (-) False G223969
TU255996 other downstream 521248 11172120 ~ 11174367 (-) True G223942
TU255954 other downstream 621865 11070946 ~ 11073750 (-) False znf628
TU254793 other downstream 1672412 10020648 ~ 10023203 (-) False LOC110508724
TU257101 other upstream 31502 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 56991 11752851 ~ 11753680 (-) False G224869
TU257114 other upstream 56991 11752851 ~ 11753680 (-) False G224869
TU257115 other upstream 56991 11752851 ~ 11753680 (-) True G224869
TU257122 other upstream 100030 11795890 ~ 11796309 (-) True G224873

Expression Profile