rps9 (rps9)


Basic Information

Item Value
gene id rps9
gene name rps9
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10074725 ~ 10077392 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589539.2
ACCAATTGCTGCTTTGAAGTGGTGTCGTCACATATTTTTGGGAAATGTAGTTCGCGGGATCCATATAAATAATGGAGAGATCCAATTTGACTTCCTCTTTATCGTACTGGCCTGTGGAAGACAGGCACTTTGATCCACCATGCCCGTTGCCAGGAGTTGGGTTTGTCGCAAGACATACGTCACCCCCCGCCGCCCCTTCGAGAAGTCTCGTCTTGACCAGGAGCTTAAACTTATCGGGGAGTATGGTCTGAGGAACAAGCGTGAGGTGTGGAGGGTGAAGTTCACCCTGGCCAAGATTCGCAAGGCTGCCAGAGAGCTGCTCACTCTGGATGAGAAGGACCCCAAGCGTCTTTTTGAAGGTAACGCCCTGCTCAGGCGTCTGGTGAGAATCGGTGTGCTGGATGAGGGCAAGATGAAGCTCGATTACATCCTGGGCCTGAAGGTGGAGGACTTCTTGGAGAGGAGGCTCCAGACGCAGGTCTTCAAGCTGGGCCTTGCTAAGAGCATCCACCACGCCCGCGTTCTCATCCGCCAGAGGCACATCCGTGTGCGCAAGCAGGTGGTCAACATCCCCTCCTTCGTGGTGCGCCTGGACAGCCAGAAGCACATTGACTTCTCCCTGCGTTCACCATACGGTGGCGGACGCCCCGGCCGAGTCAAGAGAAAGAATGCCAAGAAGGGCCAGGGTGGTGCTGGGGGAgctgatgaggaagaggaggattaaAATGGAGGCTGACTGGGTGTGTTCGTGTCTGGCACTTCCTGTTTTTCAATAATAAAAACATTATTTGACCACAAA

Function

symbol description
rps9 Predicted to enable rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in positive regulation of translational fidelity. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS9 (ribosomal protein S9).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006412 translation biological_process
GO:0015935 small ribosomal subunit cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02997 RP-S9e, RPS9; small subunit ribosomal protein S9e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589539.2 True 799 mRNA 0.54 5 10074725 10077392

Neighbor

gene id symbol gene type direction distance location
mboat7 mboat7 coding downstream 1870 10063117 ~ 10072855 (-)
tmc4 LOC106577196 coding downstream 12255 10053535 ~ 10062470 (-)
LOC110508742 LOC106577219 coding downstream 21357 10047635 ~ 10053368 (-)
LOC110520824 lmtk3 coding downstream 27241 10024448 ~ 10047484 (-)
LOC110508724 prpf31 coding downstream 50720 10019313 ~ 10024005 (-)
LOC110520825 LOC106605761 coding upstream 22045 10099437 ~ 10128902 (-)
LOC110508790 grwd1 coding upstream 67141 10144533 ~ 10151145 (-)
LOC110508798 LOC106577146 coding upstream 82942 10160334 ~ 10163967 (-)
flcn LOC106577129 coding upstream 90392 10167784 ~ 10180249 (-)
LOC118945753 NA coding upstream 113965 10191357 ~ 10191771 (-)
LOC110508696 ndufa3 non-coding downstream 71831 10001415 ~ 10002941 (-)
G223058 NA non-coding downstream 75349 9998968 ~ 9999376 (-)
G223047 NA non-coding downstream 75963 9973761 ~ 9998762 (-)
G223081 NA non-coding upstream 9460 10086852 ~ 10089362 (-)
G223112 NA non-coding upstream 65917 10143309 ~ 10143823 (-)
G223115 NA non-coding upstream 75953 10153345 ~ 10153706 (-)
G223148 NA non-coding upstream 140069 10217461 ~ 10219349 (-)
G223070 NA other downstream 59833 10012961 ~ 10014892 (-)
LOC110534283 LOC106573819 other downstream 391354 9679758 ~ 9689081 (-)
LOC118944443 LOC106573533 other downstream 401286 9665862 ~ 9673439 (-)
znf628 LOC106605829 other upstream 993554 11068525 ~ 11079570 (-)
G223942 LOC106576860 other upstream 1094728 11172120 ~ 11174367 (-)
G223969 LOC106605840 other upstream 1198525 11275917 ~ 11278628 (-)
LOC110509576 LOC106576947 other upstream 1649970 11727284 ~ 11741584 (-)
G224869 NA other upstream 1675459 11752851 ~ 11753680 (-)

Expression


Co-expression Network