XLOC_021610 (ccdc115)


Basic Information

Item Value
gene id XLOC_021610
gene name ccdc115
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 19198244 ~ 19201328 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042892
GTCATGTGACTTTTTATCATGTGACCGGTAGAGGCTCTGAAGCGTTCCACAGGAATACATCTGTTTATCGAGTccattattttctgcctttttaATCATCCAGTACTTTCTGGTTTAAAAAACGACAGAAATGCGAGTTGATGAAAATCTCCGACTGGACGAGCAGTTGCTGCTGTTTATGGAGCAGCTCGAGGCTCTGGAGGAGAAACGACAAAGACTTAATTCCCTTATAGAAGAGGGATGGTTTTCAATCGCCAAAGCACGTTATTCAATGGGGAATAAGCAGGTCTCTGCTCTGCAGTATGCTAGTGAGATGCAGCCACTTGTTCATGTTGAAACCAGTTTGTTGGAAGGAGGAACAGCAGAGTTCAAGTGTGAGAGAAGCGAGAATAAAGCAGAAGAACAGAAAACTAAAACAATAGAAGACATTGGAGCAAAAGAGACAGGTCTTCGGAGACGAGTACATACCAAACAAAAGGAGGTTAAAGAAGGCGAACAAGAGACAGATGAAGTGAAAACAAAGACAGACTCACCCACGCCAGAACACAGGGATCCCTTGAAGTGGTTTGGGATCCTTGTACCGCAAAATCTGAAACAAGCTCAGTCTGCCTTTAAAGAGGTCATCACTCTGTCTGTAGAAATTGCATCCTTGCAAAGCACAATACTTGCTACAAGGAAAGAGATGCAAGTCCAAATGAAGGAGAAACAAGAGAGGACAGAGAAGGCTCAGGTGGAAGTAAAAGAGGAATAACGGCAGACTCTTTCTTTTTCATCCatattcattatttattgatATGTTGGATGTTTGACATCACTGTTATTGCATAAACAATGCTATTTTCCCAATTAAAAAAAACCTGTTTCAAGCAGTAATACACACTTGAATTCATTAAATGTGCATATTTACTTTA
>TCONS_00042893
AAAAACGACAGAAATGCGAGTTGATGAAAATCTCCGACTGGACGAGCAGTTGCTGCTGTTTATGGAGCAGCTCGAGGCTCTGGAGGAGAAACGACAAAGACTTAATTCCCTTATAGAAGAGGGATGGTTTTCAATCGCCAAAGCACGTTATTCAATGGGGAATAAGCAGGTCTCTGCTCTGCAGTATGCTAGTGAGATGCAGCCACTTGTTCATGTTGAAACCAGGTCTGTTTTTCTCAACATGCGATTATCGTTAACTTTTCCCTCGTGCTTTAGTTTTAATCATTGTACTAGCTGACTAATTCTACTTGATTCAAAGTTTGTTGGAAGGAGGAACAGCAGAGTTCAAGTGTGAGAGAAGCGAGAATAAAGCAGAAGAACAGAAAACTAAAACAATAGAAGACATTGGAGCAAAAGAGACAGGTCTTCGGAGACGAGTACATACCAAACAAAAGGAGGTTAAAGAAGGCGAACAAGAGACAGATGAAGTGAAAACAAAGACAGACTCACCCACGCCAGAACACAGGGATCCCTTGAAGTGGTTTGGGATCCT

Function

symbol description
ccdc115 Predicted to enable unfolded protein binding activity. Predicted to be involved in cellular iron ion homeostasis. Predicted to act upstream of or within vacuolar proton-transporting V-type ATPase complex assembly. Predicted to be located in endoplasmic reticulum. Predicted to be part of vacuolar proton-transporting V-type ATPase complex. Predicted to be extrinsic component of endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIo. Orthologous to human CCDC115 (coiled-coil domain containing 115).

GO:

id name namespace
GO:0006879 cellular iron ion homeostasis biological_process
GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly biological_process
GO:0005764 lysosome cellular_component
GO:0005768 endosome cellular_component
GO:0042406 extrinsic component of endoplasmic reticulum membrane cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0030137 COPI-coated vesicle cellular_component
GO:0005793 endoplasmic reticulum-Golgi intermediate compartment cellular_component
GO:0016471 vacuolar proton-transporting V-type ATPase complex cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-050227-20 Predicted to enable unfolded protein binding activity. Predicted to be involved in cellular iron ion homeostasis. Predicted to act upstream of or within vacuolar proton-transporting V-type ATPase complex assembly. Predicted to be located in endoplasmic reticulum. Predicted to be part of vacuolar proton-transporting V-type ATPase complex. Predicted to be extrinsic component of endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIo. Orthologous to human CCDC115 (coiled-coil domain containing 115).

Ensembl:

ensembl_id ENSDARG00000033533

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042892 False 911 mRNA 0.41 5 19198244 19201328
TCONS_00042893 True 553 lncRNA 0.43 3 19198361 19200193

Neighbor

gene id symbol gene type direction distance location
XLOC_021609 si:dkey-93l1.4 coding upstream 10428 19182819 ~ 19187816 (+)
XLOC_021608 CR388168.2 coding upstream 15856 19177891 ~ 19182388 (+)
XLOC_021607 NA coding upstream 78801 19105546 ~ 19119443 (+)
XLOC_021606 CR788311.1 coding upstream 131257 19051485 ~ 19066987 (+)
XLOC_021605 cox4i2 coding upstream 247096 18944388 ~ 18951148 (+)
XLOC_021611 si:dkey-109j17.5 coding downstream 1308 19202636 ~ 19206419 (+)
XLOC_021612 apobec2b coding downstream 12144 19213472 ~ 19221027 (+)
XLOC_021613 CR388168.1 coding downstream 16200 19217528 ~ 19218940 (+)
XLOC_021614 NA coding downstream 272068 19473396 ~ 19476151 (+)
XLOC_021615 atp6ap1lb coding downstream 357246 19558574 ~ 19583814 (+)
XLOC_021604 NA non-coding upstream 269242 18924470 ~ 18929002 (+)
XLOC_021602 CR847953.2 non-coding upstream 466845 18731322 ~ 18731399 (+)
XLOC_021627 AL953864.1 non-coding downstream 986297 20187625 ~ 20187739 (+)
XLOC_021628 NA non-coding downstream 1143982 20345310 ~ 20361426 (+)
XLOC_021632 CR352228.2 non-coding downstream 1270427 20471755 ~ 20471870 (+)

Expression


Co-expression Network