XLOC_021615 (atp6ap1lb)


Basic Information

Item Value
gene id XLOC_021615
gene name atp6ap1lb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 19558574 ~ 19583814 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042897
GGATGCACAGTCGGAAGTGCTTTGCACGCTGTCAGAGAACGCCAGGAGTGCTTTGAGGACGAGAAATACAGTTCACTGTGATACAAATGTTCACTTCTCCACTTTCATTGTACAGAAGAAAGATCAAGTGAAAGTGCTGTAAATGCTGAGGCTGTCAGTGCCTTTTGTGTTTCACAGAGGAAATGTAATTTTTGGAACAAGATTAGGCTCGGAGGTCCCACCATACCAAGCTGTGAGAATTAGAACAGATGGAGAACATGTTGAGAGTCCAAGTGCCTCACACGAGGAGAGTTATTCGCCTGCAGCTGAAAATCCACTCAGAAGAATACTGCAGCCTTACGGTTGGCATCTGCATGCCCAGCCCAGAACCAAGAGGAAGTTACTACAGTCTACCAGCTCGGGACCCTACTCTCCACTGACTGTAGCTTACAACGGCAAGATCTGTATCCTGTTCAAAGCTAAGAGACTGGCTATTCGATACAGGAACAACACTTTCCTGGACCTTACAGAGAGGGTGTTTGGATCCAGCGCACAAGTGGACACCAAAGGCTCTGTTTGTACAAAAGAGAAGGCCACGCTATCTTTGCGTTTGGGTGATGTGGAAGATATCAAGGGACTTGTCATCAGGCTTCAGATGTCCAACACCTTCTACGAATCAGTAGGCCAGAACTGGTTCACTCTAGACAGCGTTCACATCCACTACAACTGGACTCATGAGGCCACGTTCAATGCCACGGAGGTCTATGCCCCCGCCACCTATTCTTACCACTGCCAGCACGTCAGCAGCTTACAGAAATATGACACCTTACTGGTGCCCAGCTCCTACACTGACAGCTCGGCAAACTGGCACATCACGTTCACAGATTTTCAGATCCAGGCCTTTAACGTCCAGTCCAACAAGTTTGCTTCGGCGAGTGATTGTGCAACCTTCTTTACTCCAGCCATCTTGATGGGCCTGATCACATCTCTGATTCTTCTACTGGTGTTGGCCTACGCCCTGCACATGGTGGTCCATCTCAAGCACATCGACCGTTATGAAGAGCACAAGACCACCGTCTACTTCCCCCGCACCCCTGAAGCTGAGCTCCCAGACAAAAACAGTGTCTGAGGAGTGATGGCAGTGCTGTGAAACCAGCAAGAGACCAGAATGGAAAGGATTGCTAGTTCTGATTCTGGATGGCTGCATTGTCCTCTTGGTCTTCCTTCTGCCTGGCACGAAATCTTCTCATTATCGCTGTCTTAACTTAACTTCTTACAGTCAGAGGATGAGATTACCTGATCAAGCAGGTGTTAAAACCCAGGCTGGAGCCAATACCTGGACAGATCACGGCTTTCCAAGACCAGGACTGGGAAGCCTATGAAATGGGGACAAAAAATTGTGAGATTGCCTTTTGACAGACCACCATATTCTGGCGGGCTTTCCAAAGCACTTCCCTGACTGGATACAAGTACTGTGGTTAGAAGTCTATGAATTGACAAGGCAGCGGATGCAgactgtaaaacaaaacaatgagtATGGAAGTCGTcttggtttttcttttttttttacagtacttcaTGAATCACCATTTCATTCATCTGTAATGGAGTCCTTAGACTGATCTGCCAATTACAAGAACTGTTTTATGACTGCCAAAGTGGTGCAAAACTGTTTGTCAGCCTTGATGGGTAACTGACAGTAATAATGTGAATACGAAACGTACAAACAAACAAAGCGTAAATGTACAGTGCTTAATACTATTTATGTATTCCAGAACTACACGGCTTAGATTCAGGAACTCCATAAATATACTCATTGGCTTAAAACGATCAGCTAGACATTCTCATAGATCTAGATTCAACTGCTGTTTAAGTACCAACTTCCAGTATTAAGCACCTTCAGATCTATAATTGTTAAGTGCGTAAAAAAACGTATAGCAAGAAGAACTTTTTTAAGCTTCGGAAACTAATGTATTGCACAGGAAATTTTTATATGATCTCATAATTGCTAGGTCTATATGCCGTCCCTTTTCAGGTTGGAATATATTAGCACTGATAGATGAATTTAGCACCCCTTTGAGAATTTATAGTACAGACAGTATAACTATAGTGAGGTAATGCTGAAAGAATGCTGTACAATTATTCATGTAAGTGTACCCTCAGTATCATAATCAGTATACCTCTATATCTACAATTATAACATCCGTAGCTCATTATCACAATAACCTGCAGCATGACAATGACTAGAGATAAACCTCTACCATGGCACGTCTGATACTGGAGGTAGCAATGTGTTTGTTTGAATGATGGTCGTACACACTGAAGTGCACAAGAAGTTTCCTGAACATCAGTCAATTCAGTCTGAACAATAAACAGTGATCAGCTCAAAA
>TCONS_00042898
GTTTAATTACCTTCAGAAAGATCCTACTTAGTCTGTCTGGGTGTGAACAGTCTGGATGTGATTCATTTGCAGTCGCTGTGTTCCACTAAAACGTCCTTGCCCTGAAAATGACTCCCCAAActggctgcttacctccatgtgaactgcttttccgctgttaccagtttgtccagttagcgcACCATGTaagtcggcggacttgagacacaaggaggagttgaccacgacaacgggGTTTAAGTccagcaaagaacggttccagaaagcagATGGAGAACATGTTGAGAGTCCAAGTGCCTCACACGAGGAGAGTTATTCGCCTGCAGCTGAAAATCCACTCAGAAGAATACTGCAGCCTTACGGTTGGCATCTGCATGCCCAGCCCAGAACCAAGAGGAAGTTACTACAGTCTACCAGCTCGGGACCCTACTCTCCACTGACTGTAGCTTACAACGGCAAGATCTGTATCCTGTTCAAAGCTAAGAGACTGGCTATTCGATACAGGAACAACACTTTCCTGGACCTTACAGAGAGGGTGTTTGGATCCAGCGCACAAGTGGACACCAAAGGCTCTGTTTGTACAAAAGAGAAGGCCACGCTATCTTTGCGTTTGGGTGATGTGGAAGATATCAAGGGACTTGTCAT
>TCONS_00042899
GAGCAGATTATGAAGCAGACCTCATCTCTGGCAGTCTCGTCAGATTGTCTCAATGGCTAAACACAAGCTTTTCCTGTTTTTTTCTCTGttactgtgtgtgtttatctctCTGTCTTTGCCCTTCGATCAAGTGCCTGCGATCCTGGACAGGAGCTCGGAGGTCCCACCATACCAAGCTGTGAGAATTAGAACAGATGGAGAACATGTTGAGAGTCCAAGTGCCTCACACGAGGAGAGTTATTCGCCTGCAGCTGAAAATCCACTCAGAAGAATACTGCAGCCTTACGGTTGGCATCTGCATGCCCAGCCCAGAACCAAGAGGAAGTTACTACAGTCTACCAGCTCGGGACCCTACTCTCCACTGACTGTAGCTTACAACGGCAAGATCTGTATCCTGTTCAAAGCTAAGAGACTGGCTATTCGATACAGGAACAACACTTTCCTGGACCTTACAGAGAGGGTGTTTGGATCCAGCGCACAAGTGGACACCAAAGGCTCTGTTTGTACAAAAGAGAAGGCCACGCTATCTTTGCGTTTGGGTGATGTGGAAGATATCAAGGGACTTGTCATCAGGCTTCAGATGTCCAACACCTTCTACGAATCAGTAGGCCAGAACTGGTTCACTCTAGACAGCGTTCACATCCACTACAACTGGACTCATGAGGCCACGTTCAATGCCACGGAGGTCTATGCCCCCGCCACCTATTCTTACCACTGCCAGCACGTCAGCAGCTTACAGAAATATGACACCTTACTGGTGCCCAGCTCCTACACTGACAGCTCGGCAAACTGGCACATCACGTTCACAGATTTTCAGATCCAGGCCTTTAACGTCCAGTCCAACAAGTTTGCTTCGGCGAGTGATTGTGCAACCTTCTTTACTCCAGCCATCTTGATGGGCCTG

Function

symbol description
atp6ap1lb Predicted to be involved in regulation of cellular pH. Predicted to act upstream of or within proton transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of plasma membrane proton-transporting V-type ATPase complex. Orthologous to human ATP6AP1L (ATPase H+ transporting accessory protein 1 like (pseudogene)).

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0030641 regulation of cellular pH biological_process
GO:0033180 proton-transporting V-type ATPase, V1 domain cellular_component
GO:0033181 plasma membrane proton-transporting V-type ATPase complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-117 Predicted to be involved in regulation of cellular pH. Predicted to act upstream of or within proton transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of plasma membrane proton-transporting V-type ATPase complex. Orthologous to human ATP6AP1L (ATPase H+ transporting accessory protein 1 like (pseudogene)).

Ensembl:

ensembl_id ENSDARG00000090963

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042897 False 2369 mRNA 0.44 7 19558574 19583814
TCONS_00042898 False 645 processed_transcript 0.48 5 19560074 19577246
TCONS_00042899 True 904 mRNA 0.49 7 19564392 19582403

Neighbor

gene id symbol gene type direction distance location
XLOC_021614 NA coding upstream 82423 19473396 ~ 19476151 (+)
XLOC_021612 apobec2b coding upstream 337547 19213472 ~ 19221027 (+)
XLOC_021613 CR388168.1 coding upstream 339634 19217528 ~ 19218940 (+)
XLOC_021611 si:dkey-109j17.5 coding upstream 352155 19202636 ~ 19206419 (+)
XLOC_021610 ccdc115 coding upstream 357246 19198244 ~ 19201328 (+)
XLOC_021616 slmapb coding downstream 6192 19590006 ~ 19604413 (+)
XLOC_021617 flnb coding downstream 22477 19606291 ~ 19652915 (+)
XLOC_021618 abhd6b coding downstream 71487 19655301 ~ 19667758 (+)
XLOC_021619 kctd6b coding downstream 86271 19670085 ~ 19673769 (+)
XLOC_021620 smim4 coding downstream 91966 19675780 ~ 19677933 (+)
XLOC_021608 CR388168.2 non-coding upstream 376186 19177891 ~ 19182388 (+)
XLOC_021607 NA non-coding upstream 439131 19105546 ~ 19119443 (+)
XLOC_021606 CR788311.1 non-coding upstream 491587 19051485 ~ 19066987 (+)
XLOC_021627 AL953864.1 non-coding downstream 603811 20187625 ~ 20187739 (+)
XLOC_021628 NA non-coding downstream 761496 20345310 ~ 20361426 (+)
XLOC_021632 CR352228.2 non-coding downstream 887941 20471755 ~ 20471870 (+)
XLOC_021651 NA non-coding downstream 1889288 21473102 ~ 21474482 (+)
XLOC_021656 CR847529.1 non-coding downstream 2039921 21623735 ~ 21623849 (+)

Expression


Co-expression Network