LOC110513075


Basic Information

Item Value
gene id LOC110513075
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21135542 ~ 21152356 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593124.2
TCCGAGTGAAAGGTTGTTAAATTATTTCAAGATGGCTGCCCCCTCGCAGATGGCAACCTCTGAGCTGTACTGCTGGGAAGGCGATTGGGATTTACCGTCTGTCGACACTGAGTGTTTCATTGTATTGGCTTATGCAAAGTTTGCAGGCGCACCCCTCAAATTTCACAAAATCGGCAACCCCTGGAGAAGTCCCACTGGCTCCCTGCCTGCCCTGAAGACCAGGGAGAATGGGAGTCTCTCTCAGCCCAGTGACATTATCATCCACCTCAGGAAACAGAAATACAATGCCGACTTCGACCTGTCTGCCAAAGAGGAAGCAGACACTCTGGCCTTCATCTCACTCCTGGAGGAAAAACGGATGCCAGCTCTGGTCTATACTCGGTGGATTGACCCTAAGAACTATGTGGAGGTGACTCGGCGCTGGCACGCGAAGCACGCCCCATTCCCCCTGAACTTCTTCCTGCCCGGCAGCATGGAGGAAGGAATCCATGCTGAAACGCCTGTGCACACTGTACTGCGATGCTATGGAGTGTATGAACCATCTCTCGCAGAGGCTGGGCTCAACAAGTTCTTCTTCCGGGACTCACCTTCATCTTTGGACGCTTTTGTCTTTGGCTACTTGGTGCCCATCCTGAAGATGAAACTGCCCAATGGAAGACTCCAATAGCACCTCAAGTCACTGGACAACCTGAGCCACTTCTGCTCCAACATCCTGGCGCTCTACTTCCCCAGTGAGGGACGAGATGTGGGACcacataacatactgtacatgcagtaTATTGTCTTCGATGATATCTATTATATAACTTGCTATTGTTGTTTAACTTTTGAATTCCATGTCTCACACTTTTTCTTGTTTATCTTTTGTGCAGAAGGTTTTAGTCGCAAGGTGTCCTCTCAGCCTGAAGGGGGTGACGCTGATAACGAGCCTGGTAAGAGGCGCAAGCAGCTGGGCGCCATGTTGAGCTACGCCCTCCTCACTGGCATTGTGGCTATTCAACATGTCAAGCAGGAGGCATTAGACCACCGTTCCCCAGGTCTCATGTCACTCTCCTCCaacgaggaggaggatgaggagggcagaggaggaggagacggctGCAATTCAAAACTGATCTCCTGTGTCTATTCCTAATTCTTCGTTGACGCTCCCTCAGAAGTCTGGAAAAAGACTGGAAAGGTGTTAACCAATATGGCAGAAGCTCCAGTTAGCCTTTTAGACTTGGTGGAAGGTTTACTCTAATGCTGATGCCTCAACAATCCCTTCAGATCCTGGAGGAGGAGTCAATACAAAGAAATTTGCTATGTATGCTATAGTGAAGACTGTGCTGGCCCTATTCCTGCATTGCAGCAAGTCAATAAAATAAACAGGGAAGTTCAATAAATCACTTCAATGTTCCAATACATCTATCTGCTTGAGGCTTGCTTTAGGATGCCAGCCATACATACATTATTGTCTAATTCAGAGTTGCAAGAAGCTCTTTGACTTTGTAAAGCAAGCCTTTACACAGCGAGCAGATGTATTGGAACATTGAAGTGATTTATTGAACTTCCCTGTTGGATAATAAATAATTTATGGTATGTAAATTTGTAATGCAATTGTTAATAGAGTTAACCTTATTCAATCTTGGTTTGAGGGCAGAAGTAATGTTACACACAGGTTGCACACAAACACCTTAACCATAAACATTTCTTGCctaaactttttttttcttttttttctccccaatttcgtagtgtCCAATTGTTgtctacaactcccgtacgggctcgggagagacaaaggttgaaagtcatgcgtcctccgatacacaacacaacc
>XR_002471956.2
TCCGAGTGAAAGGTTGTTAAATTATTTCAAGATGGCTGCCCCCTCGCAGATGGCAACCTCTGAGCTGTACTGCTGGGAAGGCGATTGGGATTTACCGTCTGTCGACACTGAGTGTTTCATTGTATTGGCTTATGCAAAGTTTGCAGGCGCACCCCTCAAATTTCACAAAATCGGCAACCCCTGGAGAAGTCCCACTGGCTCCCTGCCTGCCCTGAAGACCAGGGAGAATGGGAGTCTCTCTCAGCCCAGTGACATTATCATCCACCTCAGGAAACAGAAATACAATGCCGACTTCGACCTGTCTGCCAAAGAGGAAGCAGACACTCTGGCCTTCATCTCACTCCTGGAGGAAAAACGGATGCCAGCTCTGGTCTATACTCGGTGGATTGACCCTAAGAACTATGTGGAGGTGACTCGGCGCTGGCACGCGAAGCACGCCCCATTCCCCCTGAACTTCTTCCTGCCCGGCAGCATGGAGGAAGGAATCCATGCTGAAACGCCTGTGCACACTGTACTGCGATGCTATGGAGTGTATGAACCATCTCTCGCAGAGGCTGGGCTCAACAAGTTCTTCTTCCGGGACTCACCTTCATCTTTGGACGCTTTTGTCTTTGGCTACTTGGTGCCCATCCTGAAGATGAAACTGCCCAATGGAAGACTCCAATAGCACCTCAAGTCACTGGACAACCTGAGCCACTTCTGCTCCAACATCCTGGCGCTCTACTTCCCCAGTGAGGGACGAGATGTGGGACcacataacatactAAGGTTTTAGTCGCAAGGTGTCCTCTCAGCCTGAAGGGGGTGACGCTGATAACGAGCCTGGTAAGAGGCGCAAGCAGCTGGGCGCCATGTTGAGCTACGCCCTCCTCACTGGCATTGTGGCTATTCAACATGTCAAGCAGGAGGCATTAGACCACCGTTCCCCAGGTCTCATGTCACTCTCCTCCaacgaggaggaggatgaggagggcagaggaggaggagacggctGCAATTCAAAACTGATCTCCTGTGTCTATTCCTAATTCTTCGTTGACGCTCCCTCAGAAGTCTGGAAAAAGACTGGAAAGGTGTTAACCAATATGGCAGAAGCTCCAGTTAGCCTTTTAGACTTGGTGGAAGGTTTACTCTAATGCTGATGCCTCAACAATCCCTTCAGATCCTGGAGGAGGAGTCAATACAAAGAAATTTGCTATGTATGCTATAGTGAAGACTGTGCTGGCCCTATTCCTGCATTGCAGCAAGTCAATAAAATAAACAGGGAAGTTCAATAAATCACTTCAATGTTCCAATACATCTATCTGCTTGAGGCTTGCTTTAGGATGCCAGCCATACATACATTATTGTCTAATTCAGAGTTGCAAGAAGCTCTTTGACTTTGTAAAGCAAGCCTTTACACAGCGAGCAGATGTATTGGAACATTGAAGTGATTTATTGAACTTCCCTGTTGGATAATAAATAATTTATGGTATGTAAATTTGTAATGCAATTGTTAATAGAGTTAACCTTATTCAATCTTGGTTTGAGGGCAGAAGTAATGTTACACACAGGTTGCACACAAACACCTTAACCATAAACATTTCTTGCctaaactttttttttcttttttttctccccaatttcgtagtgtCCAATTGTTgtctacaactcccgtacgggctcgggagagacaaaggttgaaagtcatgcgtcctccgatacacaacacaacc
>XR_002471957.2
TCCGAGTGAAAGGTTGTTAAATTATTTCAAGATGGCTGCCCCCTCGCAGATGGCAACCTCTGAGCTGTACTGCTGGGAAGGCGATTGGGATTTACCGTCTGTCGACACTGAGTGTTTCATTGTATTGGCTTATGCAAAGTTTGCAGGCGCACCCCTCAAATTTCACAAAATCGGCAACCCCTGGAGAAGTCCCACTGGCTCCCTGCCTGCCCTGAAGACCAGGGAGAATGGGAGTCTCTCTCAGCCCAGTGACATTATCATCCACCTCAGGAAACAGAAATACAATGCCGACTTCGACCTGTCTGCCAAAGAGGAAGCAGACACTCTGGCCTTCATCTCACTCCTGGAGGAAAAACGGATGCCAGCTCTGGTCTATACTCGGTGGATTGACCCTAAGAACTATGTGGAGGTGACTCGGCGCTGGCACGCGAAGCACGCCCCATTCCCCCTGAACTTCTTCCTGCCCGGCAGCATGGAGGAAGGAATCCATGCTGAAACGCCTGTGCACACTGTACTGCGATGCTATGGAGTGTATGAACCATCTCTCGCAGAGGCTGGGCTCAACAAGTTCTTCTTCCGGGACTCACCTTCATCTTTGGACGCTTTTGTCTTTGGCTACTTGGTGCCCATCCTGAAGATGAAACTGCCCAATGGAAGACTCCAATAGCACCTCAAGTCACTGGACAACCTGAGCCACTTCTGCTCCAACATCCTGGCGCTCTACTTCCCCAGTGAGGGACGAGATAAGGTTTTAGTCGCAAGGTGTCCTCTCAGCCTGAAGGGGGTGACGCTGATAACGAGCCTGGTAAGAGGCGCAAGCAGCTGGGCGCCATGTTGAGCTACGCCCTCCTCACTGGCATTGTGGCTATTCAACATGTCAAGCAGGAGGCATTAGACCACCGTTCCCCAGGTCTCATGTCACTCTCCTCCaacgaggaggaggatgaggagggcagaggaggaggagacggctGCAATTCAAAACTGATCTCCTGTGTCTATTCCTAATTCTTCGTTGACGCTCCCTCAGAAGTCTGGAAAAAGACTGGAAAGGTGTTAACCAATATGGCAGAAGCTCCAGTTAGCCTTTTAGACTTGGTGGAAGGTTTACTCTAATGCTGATGCCTCAACAATCCCTTCAGATCCTGGAGGAGGAGTCAATACAAAGAAATTTGCTATGTATGCTATAGTGAAGACTGTGCTGGCCCTATTCCTGCATTGCAGCAAGTCAATAAAATAAACAGGGAAGTTCAATAAATCACTTCAATGTTCCAATACATCTATCTGCTTGAGGCTTGCTTTAGGATGCCAGCCATACATACATTATTGTCTAATTCAGAGTTGCAAGAAGCTCTTTGACTTTGTAAAGCAAGCCTTTACACAGCGAGCAGATGTATTGGAACATTGAAGTGATTTATTGAACTTCCCTGTTGGATAATAAATAATTTATGGTATGTAAATTTGTAATGCAATTGTTAATAGAGTTAACCTTATTCAATCTTGGTTTGAGGGCAGAAGTAATGTTACACACAGGTTGCACACAAACACCTTAACCATAAACATTTCTTGCctaaactttttttttcttttttttctccccaatttcgtagtgtCCAATTGTTgtctacaactcccgtacgggctcgggagagacaaaggttgaaagtcatgcgtcctccgatacacaacacaacc
>XR_002471958.2
TCCGAGTGAAAGGTTGTTAAATTATTTCAAGATGGCTGCCCCCTCGCAGATGGCAACCTCTGAGCTGTACTGCTGGGAAGGCGATTGGGATTTACCGTCTGTCGACACTGAGTGTTTCATTGTATTGGCTTATGCAAAGTTTGCAGGCGCACCCCTCAAATTTCACAAAATCGGCAACCCCTGGAGAAGTCCCACTGGCTCCCTGCCTGCCCTGAAGACCAGGGAGAATGGGAGTCTCTCTCAGCCCAGTGACATTATCATCCACCTCAGGAAACAGAAATACAATGCCGACTTCGACCTGTCTGCCAAAGAGGAAGCAGACACTCTGGCCTTCATCTCACTCCTGGAGGAAAAACGGATGCCAGCTCTGGTCTATACTCGGTGGATTGACCCTAAGAACTATGTGGAGGTGACTCGGCGCTGGCACGCGAAGCACGCCCCATTCCCCCTGAACTTCTTCCTGCCCGGCAGCATGGAGGAAGGAATCCATGCTGAAACGCCTGTGCACACTGTACTGCGATGCTATGGAGTGTATGAACCATCTCTCGCAGAGGCTGGGCTCAACAAGTTCTTCTTCCGGGACTCACCTTCATCTTTGGACGCTTTTGTCTTTGGCTACTTGGTGCCCATCCTGAAGATGAAACTGCCCAATGGAAGACTCCAATAGCACCTCAAGTCACTGGACAACCTGAGCCACTTCTGCTCCAACATCCTGGCGCTCTACTTCCCCAAAGGTTTTAGTCGCAAGGTGTCCTCTCAGCCTGAAGGGGGTGACGCTGATAACGAGCCTGGTAAGAGGCGCAAGCAGCTGGGCGCCATGTTGAGCTACGCCCTCCTCACTGGCATTGTGGCTATTCAACATGTCAAGCAGGAGGCATTAGACCACCGTTCCCCAGGTCTCATGTCACTCTCCTCCaacgaggaggaggatgaggagggcagaggaggaggagacggctGCAATTCAAAACTGATCTCCTGTGTCTATTCCTAATTCTTCGTTGACGCTCCCTCAGAAGTCTGGAAAAAGACTGGAAAGGTGTTAACCAATATGGCAGAAGCTCCAGTTAGCCTTTTAGACTTGGTGGAAGGTTTACTCTAATGCTGATGCCTCAACAATCCCTTCAGATCCTGGAGGAGGAGTCAATACAAAGAAATTTGCTATGTATGCTATAGTGAAGACTGTGCTGGCCCTATTCCTGCATTGCAGCAAGTCAATAAAATAAACAGGGAAGTTCAATAAATCACTTCAATGTTCCAATACATCTATCTGCTTGAGGCTTGCTTTAGGATGCCAGCCATACATACATTATTGTCTAATTCAGAGTTGCAAGAAGCTCTTTGACTTTGTAAAGCAAGCCTTTACACAGCGAGCAGATGTATTGGAACATTGAAGTGATTTATTGAACTTCCCTGTTGGATAATAAATAATTTATGGTATGTAAATTTGTAATGCAATTGTTAATAGAGTTAACCTTATTCAATCTTGGTTTGAGGGCAGAAGTAATGTTACACACAGGTTGCACACAAACACCTTAACCATAAACATTTCTTGCctaaactttttttttcttttttttctccccaatttcgtagtgtCCAATTGTTgtctacaactcccgtacgggctcgggagagacaaaggttgaaagtcatgcgtcctccgatacacaacacaacc
>XR_002471955.2
TCCGAGTGAAAGGTTGTTAAATTATTTCAAGATGGCTGCCCCCTCGCAGATGGCAACCTCTGAGCTGTACTGCTGGGAAGGCGATTGGGATTTACCGTCTGTCGACACTGAGTGTTTCATTGTATTGGCTTATGCAAAGTTTGCAGGCGCACCCCTCAAATTTCACAAAATCGGCAACCCCTGGAGAAGTCCCACTGGCTCCCTGCCTGCCCTGAAGACCAGGGAGAATGGGAGTCTCTCTCAGCCCAGTGACATTATCATCCACCTCAGGAAACAGAAATACAATGCCGACTTCGACCTGTCTGCCAAAGAGGAAGCAGACACTCTGGCCTTCATCTCACTCCTGGAGGAAAAACGGATGCCAGCTCTGGTCTATACTCGGTGGATTGACCCTAAGAACTATGTGGAGGTGACTCGGCGCTGGCACGCGAAGCACGCCCCATTCCCCCTGAACTTCTTCCTGCCCGGCAGCATGGAGGAAGGAATCCATGCTGAAACGCCTGTGCACACTGTACTGCGATGCTATGGAGTGTATGAACCATCTCTCGCAGAGGCTGGGCTCAACAAGTTCTTCTTCCGGGACTCACCTTCATCTTTGGACGCTTTTGTCTTTGGCTACTTGGTGCCCATCCTGAAGATGAAACTGCCCAATGGAAGACTCCAATAGCACCTCAAGTCACTGGACAACCTGAGCCACTTCTGCTCCAACATCCTGGCGCTCTACTTCCCCAGTGAGGGACGAGATGTGGGACcacataacatactgtacatgcagtaTATTGTCTTCGATGATATCTATTATATAACTTGCTATTGTTGTTTAACTTTTGAATTCCATGTCTCACACTTTTTCTTGTTTATCTTTTGTGCAGAAGGTTTTAGTCGCAAGGTGTCCTCTCAGCCTGAAGGGGGTGACGCTGATAACGAGCCTGGTAAGAGGCGCAAGCAGCTGGGCGCCATGTTGAGCTACGCCCTCCTCACTGGCATTGTGGCTATTCAACATGTCAAGCAGGAGGCATTAGACCACCGTTCCCCAGGTCTCATGTCACTCTCCTCCaacgaggaggaggatgaggagggcagaggaggaggagacggctGCAATTCAAAACTGATCTCCTGTGTCTATTCCTAATTCTTCGTTGACGCTCCCTCAGAAGTCTGGAAAAAGACTGGAAAGtgtCCAATTGTTgtctacaactcccgtacgggctcgggagagacaaaggttgaaagtcatgcgtcctc
>TU267692
TTCAACATGTCAAGCAGGAGGCATTAGACCACCGTTCCCCAGGTCTCATGTCACTCTCCTCCaacgaggaggaggatgaggagggcagaggaggaggagacggctGCAATTCAAAACTGATCTCCTGTGTCTATTCCTAATTCTTCGTTGACGCTCCCTCAGAAGTCTGGAAAAAGACTGGAAAGtgtCCAATTGTTgtctacaactcccgtacgggctcgggagagacaaaggttgaaagtcatgcgtcctccgatacacaacacaaccaagccgcactgcttcttaacacagcgcgcatccaacccggaagccagccgcacctggcaaccttgcacctggcgcactgcgcccggcccgccacaggagtcgctggtgtgcgacgagacaaggacatccctaacccggacgacgctaggccaattgtgagtCGCCCAACGACAGAgcttgggcgcgaacccagggtctctgatgctgcagtacagcgcccttaaccactgcgccacccgggaggctcttGCCTAAACTCAATCCAACCCCCTGAAcctgcctaaccttaaccaattaGGATTACTTGCCTAAACTTAACCAAACACATTTGTTTCTGCCCTCGAGGCAAAGCTGCCCTCGGGACCAGATACAATAAATATATGCCAAAAATTAGGATGTGGGGTGTAAAGATGAGGATGGAACACCCGTAGCATGAATATATAGCATTTTTTATAGTGCGAAAAAGAGTTGAAAAACCAAACTAAATGTATTCATGTTGGCTTTATTTTCATGGTTGAATAAATGGGTCACATAC

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006626 protein targeting to mitochondrion biological_process
GO:0005741 mitochondrial outer membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593124.2 False 1822 mRNA 0.46 7 21136077 21152356
XR_002471956.2 False 1715 mRNA 0.47 8 21136077 21152356
XR_002471957.2 False 1695 mRNA 0.47 8 21136077 21152356
XR_002471958.2 False 1681 mRNA 0.47 8 21136077 21152356
XR_002471955.2 False 1248 mRNA 0.51 8 21136094 21152356
TU267692 True 805 lncRNA 0.57 2 21135542 21136903

Neighbor

gene id symbol gene type direction distance location
LOC110513063 thbs3 coding downstream 2182 21112222 ~ 21133895 (-)
LOC110513019 LOC106580057 coding downstream 35970 21091787 ~ 21100107 (-)
si:dkey-12j5.1 LOC106580016 coding downstream 167709 20927954 ~ 20968368 (-)
glipr2l LOC106605424 coding downstream 484025 20648378 ~ 20652052 (-)
LOC110512925 NA coding downstream 540522 20590446 ~ 20595555 (-)
LOC110513123 LOC106580095 coding upstream 15784 21168140 ~ 21172480 (-)
LOC110513176 LOC106605439 coding upstream 46409 21198765 ~ 21230066 (-)
dcst1 dcst1 coding upstream 78313 21230669 ~ 21239790 (-)
LOC110513266 LOC106580174 coding upstream 156488 21308844 ~ 21320007 (-)
LOC110503878 LOC106605446 coding upstream 167836 21320192 ~ 21331512 (-)
G234187 NA non-coding downstream 8743 21127126 ~ 21127334 (-)
G234179 NA non-coding downstream 24616 21110939 ~ 21111461 (-)
G234173 NA non-coding downstream 32929 21102901 ~ 21103148 (-)
G234171 NA non-coding downstream 34761 21100779 ~ 21101316 (-)
G234166 NA non-coding downstream 44869 21088585 ~ 21091208 (-)
G234223 NA non-coding upstream 22325 21174681 ~ 21175325 (-)
G234313 NA non-coding upstream 106550 21258906 ~ 21259200 (-)
G233513 LOC106561082 other downstream 584080 20551783 ~ 20551997 (-)
G233052 LOC106605397 other downstream 1379459 19756204 ~ 19757908 (-)
G232980 NA other downstream 1487448 19648086 ~ 19648629 (-)
rims2a LOC106579570 other downstream 1536976 19416054 ~ 19652601 (-)
G234224 LOC106605437 other upstream 26241 21178597 ~ 21180682 (-)
LOC110513321 LOC106580205 other upstream 293132 21438546 ~ 21455972 (-)
G234600 NA other upstream 317305 21469661 ~ 21469945 (-)
G234621 NA other upstream 346052 21498408 ~ 21498832 (-)
G235092 LOC100194668 other upstream 586489 21738845 ~ 21743411 (-)

Expression


Co-expression Network