XLOC_021659 (CR548634.2)


Basic Information

Item Value
gene id XLOC_021659
gene name CR548634.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 21781577 ~ 21783450 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042989
GTTGGAATTGCCTTCCTGACAGGAGCGAGCTAATGGCTAGCAACAGGTCTTCTTTAAGTTTATTCTTACAGGTTGATCACTCGTACCGTAAAAACGTAAAACATCTGCTTTGACTCCTCGGATGTCCACATCTGCGCTGACTCCACAGACGTTTACATCTGCACTGTCTTAAATTAACGAATCAATATCTACAATCTACAATGATTCCACTGGCGTCCACATCTGCATTATCTCCTTAGACATCAACATTTGGACTGACTGACCACAGACATTTATTATTCACTAAACTTATCAATCACCACCTGTGCTGTGTGTTGAATTTTTTTCTGGAATTGTGTAGGATTGGGACAATAGTAGATTTTGACtttttataaatgataataaatatgatttttttatacatttattgtttcccTTTCTGGAATAAAGGAATATAAACAGC

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0043009 chordate embryonic development biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0071599 otic vesicle development biological_process
GO:0071600 otic vesicle morphogenesis biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0072175 epithelial tube formation biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0035148 tube formation biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0048704 embryonic skeletal system morphogenesis biological_process
GO:0048705 skeletal system morphogenesis biological_process
GO:0048706 embryonic skeletal system development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005840 ribosome cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0000502 proteasome complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097585

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042989 True 442 lncRNA 0.37 2 21781577 21783450

Neighbor

gene id symbol gene type direction distance location
XLOC_021658 dhrs3a coding upstream 106898 21663631 ~ 21674679 (+)
XLOC_021657 igsf21b coding upstream 119661 21638258 ~ 21661916 (+)
XLOC_021655 arhgef10lb coding upstream 150523 21566828 ~ 21631054 (+)
XLOC_021656 CR847529.1 coding upstream 157728 21623735 ~ 21623849 (+)
XLOC_021654 arhgef10lb coding upstream 218522 21544227 ~ 21563055 (+)
XLOC_021660 NA coding downstream 122603 21906053 ~ 21914926 (+)
XLOC_021661 lactbl1a coding downstream 180875 21964325 ~ 21974831 (+)
XLOC_021662 eif4g3b coding downstream 195134 21978584 ~ 22060520 (+)
XLOC_021663 slc2a1a coding downstream 417017 22200467 ~ 22212635 (+)
XLOC_021664 rap1gap coding downstream 483924 22267374 ~ 22425257 (+)
XLOC_021651 NA non-coding upstream 307095 21473102 ~ 21474482 (+)
XLOC_021632 CR352228.2 non-coding upstream 1309707 20471755 ~ 20471870 (+)
XLOC_021628 NA non-coding upstream 1420151 20345310 ~ 20361426 (+)
XLOC_021627 AL953864.1 non-coding upstream 1593838 20187625 ~ 20187739 (+)
XLOC_021666 NA non-coding downstream 788708 22572158 ~ 22593289 (+)
XLOC_021671 NA non-coding downstream 1157082 22940532 ~ 22941229 (+)
XLOC_021672 AL928977.1 non-coding downstream 1169929 22953379 ~ 23016301 (+)
XLOC_021678 NA non-coding downstream 2135198 23918648 ~ 23918969 (+)

Expression


Co-expression Network