LOC110520212


Basic Information

Item Value
gene id LOC110520212
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 54425558 ~ 54429214 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002472958.2
ATGGTAGTTATCTAGCTAATTAACTATTgtcatttttgtattattatttcagAGAAAGCAGGTACACCATCTTAAGAAGTATGGAGAACTGACAGCAAACCCACGGAAGAGAAAACATACCCCTGACACTCCCTCCACCATCAAGCAGAGCACATTACTGAAGGCAGTGTCTCAAAAATCCATTGGCAAAGCTGTGGTGAAGTATGTGGTCCAAGGTCTCCAACCATTTGCTGTTGTAGAACAAAAACTGTTCAGAGAGTTAGTGCAGGATCTGCAGCCTAACTAACTCAAAGATAATATCAAGGCCCACACTGCGCTCCAGGATTGATGAAGCATCCAAGGAAATGAAGAACAAGGTGACTGAGGCCATGAGAGGAGTTGACCACATTGCCATCACCACCGACTGTTGGTCTGCAAGAAGTTGCATTGGTGTTACAGCCCATTGGATAGACCCTGACAGTCTCAACAGATGCTCTGTATCCCTGGTCTGTAAACAGTTGAGAGCATCGCAAACCTTTGATGTGTTGTCAGGTGCCCTAAATGACATACATTCTGAGTTTGAAATCCGGAGTAAGATTGTAAGAAAAATAACAGACAATGGCTCTAACTTCTTGGAAGCTTTCCAAGTTTATGGAGCAGATGAAAATAACGAGGCAGTCGAAGCAGTGGGTGGTGGGGGTGAAGCAGCTCAGCCAGGACAGGACGATGGTGAAGAGGAACAATAGGAGATTGAAGAAGTGAAGTTTGTTGATGTGGCAACGATCCTGAATGAAGGTGATGGTTTTGAGTACCAGCTGCCAAAGCACCAGCGTTGTGCTTGCCACTTACACAACTTAGTATCTAAAGGCAATTCCCTAAAAGCAACATCCAGCGAGGCTTACAAAAAAAGTGTCCTGTTCAACATTTGGCAAGTGCCAAGCACTTTGGAACAAACGCGGGAGATCCACACTTGCAGCCGAAACCATTGAAGATACTTGGAAACTCCAGCTGCTGCGTCTGAATGCTACATGGTGGAACTCCTGGTTCATGGCTGTAGAAAGACCCCTGAGGATCGTCAAAGACAAAGGAGAGGCGGCCGTCAGAGGTCTCTGCACAGACTTCAAGGTTCCAATCTGAACTCCCCTGCCTCACAGAAGATGTTGCCACAATGAGCCCAGTCGTAAAGGTCATCAACATCTGCAGGCTGAAACCAATTTCCAGATGCAGTGGCTACTTCCAACTATCAACCTGCTGATCACAACAGTTGACCGAATCAAGTTGTCCCTGAAGTACTGTAAGCCTCTGGATGTGCTACAACTGGGACTGAAGAAGCACTTCAGCCACACGTTTCAAGACTCTGAGCCGATCGCAGCTGCAATCCTTCTCCCCAAATTGACATCAGCGTGGACAAAGGATGACACCACCATCAAAATGAGAATGAACTACATCAAGGACCACATGGAAGAATCCTTGCTGCAGCTAGGCGATGGCACAAGTTCACCAGATGATACTGTAAGACTGTTACCTTTCAGAAAAACTCAAGCTCTAATCAAATAAAAGGTCTGGCTGT

Function

NR:

description
uncharacterized protein LOC105935315

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002472958.2 True 1549 mRNA 0.46 3 54425558 54429214

Neighbor

gene id symbol gene type direction distance location
LOC110520207 LOC106586304 coding downstream 233729 54181672 ~ 54191829 (-)
LOC110520203 LOC106586308 coding downstream 531770 53883698 ~ 53893788 (-)
rab3gap1 LOC106586310 coding downstream 560573 53817111 ~ 53864985 (-)
LOC110520198 LOC106586311 coding downstream 678689 53671765 ~ 53746869 (-)
ubxd2 ubxd2 coding downstream 761580 53661100 ~ 53663978 (-)
LOC110520213 ube2f coding upstream 74850 54504064 ~ 54594080 (-)
LOC110520216 LOC106586300 coding upstream 188314 54617528 ~ 54624544 (-)
LOC110520218 NA coding upstream 204524 54633738 ~ 54636478 (-)
LOC110520214 LOC106586297 coding upstream 210016 54639230 ~ 54646342 (-)
LOC110520215 LOC106586297 coding upstream 217409 54646623 ~ 54659681 (-)
G274208 NA non-coding downstream 107772 54315329 ~ 54317786 (-)
G274198 NA non-coding downstream 136287 54281582 ~ 54289271 (-)
G274126 NA non-coding downstream 196381 54174850 ~ 54229177 (-)
G273798 NA non-coding downstream 252302 54172998 ~ 54173256 (-)
G274412 NA non-coding upstream 177953 54607167 ~ 54607372 (-)
G274339 LOC106586295 non-coding upstream 240148 54669362 ~ 54678112 (-)
G274531 NA non-coding upstream 379605 54808819 ~ 54809081 (-)
G274536 NA non-coding upstream 385088 54814302 ~ 54814543 (-)
G274538 NA non-coding upstream 390054 54819268 ~ 54819476 (-)
G272713 LOC106586324 other downstream 1174474 53249926 ~ 53251084 (-)
LOC110520182 NA other downstream 1716742 52693956 ~ 52708816 (-)
il1rl1 il1rl1 other downstream 2825328 51596933 ~ 51619476 (-)
fgf9 NA other downstream 2951419 51471899 ~ 51478510 (-)
LOC110520160 LOC106586095 other downstream 3296248 51126600 ~ 51130404 (-)
G274344 LOC106586294 other upstream 250704 54679918 ~ 54682805 (-)
LOC110520227 plekhm3 other upstream 674280 55068639 ~ 55122013 (-)
G275250 NA other upstream 980929 55410143 ~ 55411487 (-)
si:dkey-91i10.3 LOC106586420 other upstream 2841568 57270782 ~ 57297762 (-)
G277673 LOC106586423 other upstream 2973770 57402984 ~ 57403575 (-)

Expression


Co-expression Network