RNA id: XR_002472958.2


Basic Information

Item Value
RNA id XR_002472958.2
length 1549
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110520212
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 54425558 ~ 54429214 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGTAGTTATCTAGCTAATTAACTATTgtcatttttgtattattatttcagAGAAAGCAGGTACACCATCTTAAGAAGTATGGAGAACTGACAGCAAACCCACGGAAGAGAAAACATACCCCTGACACTCCCTCCACCATCAAGCAGAGCACATTACTGAAGGCAGTGTCTCAAAAATCCATTGGCAAAGCTGTGGTGAAGTATGTGGTCCAAGGTCTCCAACCATTTGCTGTTGTAGAACAAAAACTGTTCAGAGAGTTAGTGCAGGATCTGCAGCCTAACTAACTCAAAGATAATATCAAGGCCCACACTGCGCTCCAGGATTGATGAAGCATCCAAGGAAATGAAGAACAAGGTGACTGAGGCCATGAGAGGAGTTGACCACATTGCCATCACCACCGACTGTTGGTCTGCAAGAAGTTGCATTGGTGTTACAGCCCATTGGATAGACCCTGACAGTCTCAACAGATGCTCTGTATCCCTGGTCTGTAAACAGTTGAGAGCATCGCAAACCTTTGATGTGTTGTCAGGTGCCCTAAATGACATACATTCTGAGTTTGAAATCCGGAGTAAGATTGTAAGAAAAATAACAGACAATGGCTCTAACTTCTTGGAAGCTTTCCAAGTTTATGGAGCAGATGAAAATAACGAGGCAGTCGAAGCAGTGGGTGGTGGGGGTGAAGCAGCTCAGCCAGGACAGGACGATGGTGAAGAGGAACAATAGGAGATTGAAGAAGTGAAGTTTGTTGATGTGGCAACGATCCTGAATGAAGGTGATGGTTTTGAGTACCAGCTGCCAAAGCACCAGCGTTGTGCTTGCCACTTACACAACTTAGTATCTAAAGGCAATTCCCTAAAAGCAACATCCAGCGAGGCTTACAAAAAAAGTGTCCTGTTCAACATTTGGCAAGTGCCAAGCACTTTGGAACAAACGCGGGAGATCCACACTTGCAGCCGAAACCATTGAAGATACTTGGAAACTCCAGCTGCTGCGTCTGAATGCTACATGGTGGAACTCCTGGTTCATGGCTGTAGAAAGACCCCTGAGGATCGTCAAAGACAAAGGAGAGGCGGCCGTCAGAGGTCTCTGCACAGACTTCAAGGTTCCAATCTGAACTCCCCTGCCTCACAGAAGATGTTGCCACAATGAGCCCAGTCGTAAAGGTCATCAACATCTGCAGGCTGAAACCAATTTCCAGATGCAGTGGCTACTTCCAACTATCAACCTGCTGATCACAACAGTTGACCGAATCAAGTTGTCCCTGAAGTACTGTAAGCCTCTGGATGTGCTACAACTGGGACTGAAGAAGCACTTCAGCCACACGTTTCAAGACTCTGAGCCGATCGCAGCTGCAATCCTTCTCCCCAAATTGACATCAGCGTGGACAAAGGATGACACCACCATCAAAATGAGAATGAACTACATCAAGGACCACATGGAAGAATCCTTGCTGCAGCTAGGCGATGGCACAAGTTCACCAGATGATACTGTAAGACTGTTACCTTTCAGAAAAACTCAAGCTCTAATCAAATAAAAGGTCTGGCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311333 lncRNA downstream 107772 54315329 ~ 54317786 (-) True G274208
TU311321 lncRNA downstream 136287 54281582 ~ 54289271 (-) True G274198
TU311243 lncRNA downstream 196381 54174850 ~ 54229177 (-) True G274126
TU311250 lncRNA downstream 233905 54182554 ~ 54191653 (-) True LOC110520207
TU310843 lncRNA downstream 252302 54172998 ~ 54173256 (-) True G273798
TU311571 lncRNA upstream 177953 54607167 ~ 54607372 (-) True G274412
TU311488 lncRNA upstream 240148 54669362 ~ 54678112 (-) True G274339
TU311690 lncRNA upstream 379605 54808819 ~ 54809081 (-) True G274531
TU311695 lncRNA upstream 385088 54814302 ~ 54814543 (-) True G274536
TU311697 lncRNA upstream 390054 54819268 ~ 54819476 (-) True G274538
XM_021597360.2 mRNA downstream 233729 54181672 ~ 54191829 (-) False LOC110520207
XR_002472957.2 mRNA downstream 531770 53887126 ~ 53893788 (-) True LOC110520203
XM_021597355.2 mRNA downstream 531772 53883698 ~ 53893786 (-) False LOC110520203
XM_021597349.2 mRNA downstream 560573 53817111 ~ 53864985 (-) True rab3gap1
XM_036974578.1 mRNA downstream 678689 53671765 ~ 53746869 (-) True LOC110520198
XM_036974604.1 mRNA upstream 74850 54504064 ~ 54594080 (-) True LOC110520213
XM_021597379.2 mRNA upstream 188314 54617528 ~ 54624544 (-) True LOC110520216
XR_002472959.2 mRNA upstream 204524 54633738 ~ 54636478 (-) True LOC110520218
XM_021597375.2 mRNA upstream 210016 54639230 ~ 54646342 (-) True LOC110520214
XM_021597378.2 mRNA upstream 217409 54646623 ~ 54659681 (-) False LOC110520215
TU309646 other downstream 1174474 53249926 ~ 53251084 (-) True G272713
TU309282 other downstream 1716742 52708183 ~ 52708816 (-) True LOC110520182
TU307459 other downstream 2825328 51597935 ~ 51600230 (-) True il1rl1
TU307458 other downstream 2825660 51597399 ~ 51599898 (-) False il1rl1
TU307414 other downstream 2951419 51473324 ~ 51474139 (-) True fgf9
TU311493 other upstream 250704 54679918 ~ 54682805 (-) True G274344
TU312299 other upstream 674280 55103494 ~ 55119212 (-) True LOC110520227
TU312498 other upstream 980929 55410143 ~ 55411487 (-) False G275250
TU312500 other upstream 980929 55410143 ~ 55411487 (-) True G275250
TU315090 other upstream 2841568 57270782 ~ 57297762 (-) True si:dkey-91i10.3

Expression Profile