RNA id: XM_036974578.1


Basic Information

Item Value
RNA id XM_036974578.1
length 4663
RNA type mRNA
GC content 0.55
exon number 27
gene id LOC110520198
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 53671765 ~ 53746869 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGCAACCTCCCCCTATCTGTCAGTCAGTTGCAGACGCGCTGCCTCCCCCTCATGTTGCCGACTGACTGGAAATAGaaacataaatatacacaccGATAACTAACAACCTAACGCAGCCGGTCACTGAGGGGCATGAGAGCCTTGTCGGAGGCCAGCGCTGTTGCTTGCCGGACCCAGTGCTGGTGACGGGGACATGGGCCTCTTCCTCAGGGCTTCCAGCACGACCCAGCTCCACACAAGTCAGAGCCTCAGCCACCAACTGGTCCAGCACCACCCAGACACCAACGGCAGCAGCACGCAGAGGGACCCCGCCTCAGTGGGTCTCGCCCTTCTCTTCGGCGCTGCCACTGACCTGCAGGCCAAGCACCGCAGccgGTCTCGAGCTCTTGGTAGACGAAGCTCCAAGTAGCCTTCTCTAATGAGGATGTCTGATACTGTCACTGTAAAGGAGACTAGCGCCACTATGAGAGGTGTGGAGACGGAGGAGAGCCACCATGCCAGTGCCACACCGACACCAGCGGGGGGAGAAGAACCAAGCCCGACCAAGACAAACGGCAGGGAGCAGGCAGAGACCCCGCCACAGGCCAAAGCTCAAACCCAGCTCCAACCCGAGATTCAACCAGAGAGCTGCTGCCAAGACAAGAACGAAACTCAGCGGCAAACACCGGGACAGATGGGAAAAAGGCCCAAGTTAAAGTTAGTTCGGAGCCTGGCTGTTTGCGAagagtcctctcctcctccccctattACCACTGATCTGCCTCGAGAACACAAGGATGAAGTTGAGATCCAGGTCTCCCAGTCATTTGACAAAGAGGAGGTGCCACCCATCAAGGATGAGGAGGACAAAGGTGTGGAGAAGCTGCTAGAGAAGACTGAGAGGATGCCCAGGAAGATGCTGTCCAGAGATTCCAGTCAGGAGTACACAGATTCTACCGGGATCGATATCCATGAATTCTTAGTAAACAcattgaaaaacaaccccagGGACAGAATGATGCTGCTGAAGTTGGAACAGGACATTCTCGACTTTATCAGTAATAACGAAAGCCAGAAGAGAAAGTTCCCTCCAATGACCTCCTACCACAGAATGCTGCTGCACCGCGTCGCCGCCTACTTCGGCCTAGACCACAACGTCGACCAAACCGGGAAATCTGTAATCATCAACAAAACTAGCAATACAAGAATccctGATCAAAAGTTTTCAGAACACATCAAAGACGACAAAACTGACGACTTCCAAAAGCGCTACATTCTCAAAAGGGACAACTCCGGCTCAGACAAAGATGACAACATGATGCGGATGCGGCTGAAGGACGACCGGAGGAGTAAGTCTATAGAGGAACGAGAGGAGGAGTACCAGAGGGCCAGAGACAGGATATTTGCTCAAGATGGTCCAGATGGCTTGGCTCTTGAAAAAAGGAAACAGGAGGATGATGCTTGTAACAGTACTCAGCAAAGGCGGCAAATGTTTAGGTTAAAAGATGGCCGCCCGGCCAACAGTCGCCAGAGCAGCTCTGAGAACGAACCCAAGTACTCTGACCCTCGGCCGTGGAGCAGCACAGACTCTGACAGCTCCAACCGTAACCTGAGGCCAGCCATGACCAAGGCCAGCAGCTTCAGCGGCATCTCTGTCCTCATCAGGGGAGACAGCTCGGGCAGCAGCAAGAGCATGGGTCGCCTCTCTAAGACTGgTTCACTAGAGTCTTCTAGTAGTGTAGGGTCCTCCACGGGttcgctctctcgctcccagcTGCCCCTCACCGTCCCAGCTCTAACCCAGGCTGGCCACCCTCACAACCACACCGTGCCCCCCTGCCCAGTGGCTTACCCAGCCACCTGCACTAGTAGTACTGTGACTTATGAGGCGGGAGGCAGGAGCGGCCCGGTGCCGCCACCACCAGCAAATACAGCTAACACTAGCTACTATTTGCTTCCCCTGGAAGCCACAGGGATACCGCCAGGGAGTATCCTGGTCAACCCACACACAGGCCAGCCCTTTGTGAACCCGGATGGCAGTGCTGTGGTATACAACCCCAACCACAGCATGGCTCCTCAGCATCAACATCATCAGCATCATAATCAGCAGGGCAGGACCCAGCAGCCCATGCtccctcctccacatcctcctggCCGCCACCAACACCAGTCCACCAATCACAACCACGTACTCTCACAGtCTGTTCTATCCCTTCCTCAGCCGGTCCGGCCCCTCCAGCCTTCTGCTCAGCCTGTCCAGTACTCATCTGTCTCTTACCCACCTCAGCTGCTCTCCGTCTCCCCTAACCAACAATACACTGTGCAAAATAACCTGGGAGCCCAGTTCAGCCACATGAGCTTGGCCCGGCAGGTCTCTGGAGAGGGCCCAGGTCGGGACACCCACATTGCCATGTACCCCTCCTCCGTCGTGCTCCAGACCCCCCCTCAGCAGCAGGGCTACATGGTGGCCCCTCCAGTCCAGCCCGTCCCGGCACCCCAGGCCTACAACACCCCCGCCCCTCCGCCTGTCAACCAGCCGGTCTTGCAGCAACAGGGCTACATGCAGCAGCAGATGCCAGCATGTTACTGTGCGCCAGGCCAGTACCCCCTGTCCAACCAGCAGTACAGGCCTGTGGGCACAGTGCAGTTCAGCGCCCCACAGAGTCAGCCAATGCCCCCGCCCACACAACAGACAGGTTACCAAACTGTGATGCCAAATCAGCCACAGAGCTATCAGAGTATGATTGGAGTGCCACAGAGTCAGAACACTGTCAGTGGCCTGCATAGCAATATGGGAAATCAGATGCAAGGCATGATGGTCCAGTATCCCTCCATGCCATCTTATCAGGTATCCATGCAGCCCCAAGGCTCACAGGGTGTGCCACAGCAGACATATCAGCAGCCTATCATCATCCCCAACCACAACCAGTCCAACCAGGGGCCCATGCCTGGCTCTGGTGTCCAGGTCTACTACAGTGTTATCACACCCAATCAACAGAACACTATGAGctctTCTGTTGGGTTCTTGCCTCCTGGAACAGAGCAGATGCAGTTCCCTCGGCCGTCCTCTCCCTGCAGCTCCCAGCAGCCCCTCCATCAGGCACAGCAGTGCTCAGGCGTTCCCCCTCCCCCAGGCGGTGGGATGGTGATGATGCAGCTGACGTTGCCCCCCGGCCAGCAACCACGGCCTCACTCGCCCCCGCAGTGGAAACACAGCAAGTACTACAGTCTGGACCACACGAGAGGACAGAAGTCCACAGAGCTCTCCACCCTAGACACCTCACAGAGCATTCCCCAGCTGGGCAGTCCCTCAACTTCCCCCGCCCAGTCGCCAACTCCCTCCCACCCACACCACCTAACCAATGTGAAGAGCATCCGTCCAGGCCTCGCCCCCGTACCCATGATGCCCCAGTTCTCCAGACCCTTTATGCCAGGGCAAGGAGATGTGCGGTACCCGTTACTAGGGCAGCCCCTCCAGTACAACCCCCAGATCCGTCCTCCTCTCCACGCTCCACCCATGGTCCCCAACCATCAGGTACCCATGGGGATGCGGCACAGCGGtggagggggcagagggaggaaGCAGACAAGGAAAGCTCTGTCTACAGATCTCAGTGTAGGTGATCCAGtgagtgggcaAGTCCTGGAGGTGACTGACCTGCCGGGAGAGATCAGCAGGACCGAGGCGGACTCTCTGCTAGGTGAGCTCTCCAGAGCCCGGGCTGTAGTCGGATGGCTCAGAGCACCACAGCCTCCGAGATTGGCAGTCGGGGGGCTAACGGTGTCCCCCACCCAAACCCACGGTCAAGCCCCTGCTGACCCAGCCTTCGTCTACACCATCCTGGCCATGTTCCCTTCCGGATACACTGCGCAGGACGCCCTCCTCCACCACAATGGCCCCCAAGCCTCCTTCAGACTCACAGTGAGCAGGGGCCACAGACACCCCCTGGAGAGGGCCAGCTCCCAGTAGAGGGCGCTAAGGACCCCTGGCTTGACCTTTCACCCCTCACCAGCACCGCCAGTCACTTCCTGTTGCCATCACTCCCCCCAGCCCCACTCCTCACTAAGTTGGCTTGTTGTTAAGGGTTGTTTTTCCACTAGAGACTTGCTTAGGGGGATTGTGTTGTACTTTGTAATGTTCTTACTAACGATTTGATGAAAAGGAACAAAAGAGCGAAACGTAACACTGATCTGACGTGAACAAACATTTAAAAACCACGATTATTGGAGTTCCAAATATTATAAACCCGTCTGCTCTCTGTTTTGAGAACCGGCCGGAACATATCAAAAGGGCagtctgtatttttgttttattttttaatttgttttataGTTGAAATCTTGAGTCAGACCCAAAGCTCATTATTATTCCCCAGCCCAGTTGCAGTGTCTGTCCTGGTTCCGTTTAACTCAACCAAAGCCTCCCCACACCCCAGGGTAGCTGATTATCGGCCACCCTGCCACCAGCCACTTGCCCCATATTGTGGCCAGTACATCATGGAGTCGCCCTTAGCTACACAATGGGTCTCTTGTGCCTTTCTCTTGAGAGTCTACTGATTTATTCTCCAAGAAACACAAAATGACACCCCAGTCAGTCTATTGTTAAATGAAAAGACCTGCCTGCACCTTGTAAATAATTTATATAGGATTGGTAATTAAATATCTCAATCACTTGTCATTTCA

Function

GO: NA

KEGG:

id description
K02360 ENC; a component of the cytoplasm (encore)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310512 lncRNA downstream 19814 53645933 ~ 53651951 (-) True G273493
TU310466 lncRNA downstream 69398 53602078 ~ 53602367 (-) True G273464
TU310456 lncRNA downstream 80085 53591439 ~ 53591680 (-) True G273454
TU310297 lncRNA downstream 274468 53397079 ~ 53397297 (-) True G273298
TU309775 lncRNA downstream 296244 53373540 ~ 53375521 (-) True G272832
TU310545 lncRNA upstream 19491 53766360 ~ 53766580 (-) True G273523
TU310614 lncRNA upstream 121840 53868709 ~ 53869460 (-) True G273584
TU310730 lncRNA upstream 271585 54018454 ~ 54025320 (-) True G273686
TU310776 lncRNA upstream 332910 54079779 ~ 54079990 (-) True G273731
TU310780 lncRNA upstream 337500 54084369 ~ 54084590 (-) True G273735
NM_001160552.1 mRNA downstream 7787 53661100 ~ 53663978 (-) True ubxd2
XM_021597344.2 mRNA downstream 109327 53537677 ~ 53562438 (-) True LOC110520195
XM_021597342.2 mRNA downstream 277447 53384541 ~ 53394318 (-) True LOC110520193
XM_021597322.2 mRNA downstream 795995 52827783 ~ 52875770 (-) False zeb2a
XM_036974563.1 mRNA downstream 795995 52827783 ~ 52875770 (-) True zeb2a
XM_021597349.2 mRNA upstream 70242 53817111 ~ 53864985 (-) True rab3gap1
XM_021597355.2 mRNA upstream 136829 53883698 ~ 53893786 (-) False LOC110520203
XR_002472957.2 mRNA upstream 140257 53887126 ~ 53893788 (-) True LOC110520203
XM_021597360.2 mRNA upstream 434803 54181672 ~ 54191829 (-) False LOC110520207
XR_002472958.2 mRNA upstream 678689 54425558 ~ 54429214 (-) True LOC110520212
TU309646 other downstream 420681 53249926 ~ 53251084 (-) True G272713
TU309282 other downstream 962949 52708183 ~ 52708816 (-) True LOC110520182
TU307459 other downstream 2071535 51597935 ~ 51600230 (-) True il1rl1
TU307458 other downstream 2071867 51597399 ~ 51599898 (-) False il1rl1
TU307414 other downstream 2197626 51473324 ~ 51474139 (-) True fgf9
TU311493 other upstream 933049 54679918 ~ 54682805 (-) True G274344
TU312299 other upstream 1356625 55103494 ~ 55119212 (-) True LOC110520227
TU312498 other upstream 1663274 55410143 ~ 55411487 (-) False G275250
TU312500 other upstream 1663274 55410143 ~ 55411487 (-) True G275250
TU315090 other upstream 3523913 57270782 ~ 57297762 (-) True si:dkey-91i10.3

Expression Profile