RNA id: XM_021597322.2


Basic Information

Item Value
RNA id XM_021597322.2
length 5442
RNA type mRNA
GC content 0.50
exon number 10
gene id zeb2a
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 52827783 ~ 52875770 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGAGATCAGTCCTAACCTGCCCATCAGGAATAACGGTCCCTCGTCAAGCTATTTTCAAGGCTTATTCCCAGTTATTTTCTTTGGATCCACGACGCACCACTTTACCATTTCTCTTTGACGTTCTGTCTTCTAACCAGCTGTTTGAAGGATCACACTGACACTCTGATACCAACCAGAGCCTGCCTGTGTGCTGCTGATTGAAGGAGCCGAGCCCATGCGGAGCGCATGCCATCTGACCTAGCCTACTCGTCTTATCAATGAAGCAGGAGATCATGGCGGAGGGTCCCCGGTGTAAGAGGCGAAAACAATCCAACCCACAAAGAAAGAACGTGCTGAACTATGAGAATGTGGTGGAGACGGGCTCCGAGACAGACGAGGATGACAGGACTCTAGTCTCAGAGGAGAATGGTCTAACCAATGGGGAGGAGGGTAGCAGCCCCATTGGGGCCGGCGTGCCCAACCTGGAGACGTCACCCAGGGTGGGCCACGCCCTGCTGTCCTACAGGGCTGGAGCAGAGGAGGGGTCAGAGGGCAGGGATGGGCGGCAGAGCCACAACCACGCCTGGCGCCTGGCAGACAACCCGCACGGACACCTCAACGGGACTGATGAAAGGAAGGAGGAATATGAATCCTTGGGGCCAGAGGGTTCTCTTCACTCTGTAGGAAATGGTACAGTGAAGGGTATGGATGGGGTGTCGGGGCTTGACGAGTACTTCACTAAGCGTAATAAACTGGAGGAGAGTGACAGCCACTCAGCCAGCATCGCTGAGTACCTGCAGCGTGGAGACACTGCCATAATTTACCCAGAAGCCCCAGAGGAAGTGACACGACTCGGAACTCCCGAGGCCGTTGGGCAAGATGAAAACGAAAACGACCTGCCACCTGGGACTCCAGATGCTTTCGCCCAACTGTTGACCTGCCCTTACTGCGACCGGGGCTACAAGCGGCTGACATCGCTCAAGGAGCACATCAAGTACCGCCATGAGAAGAACGAGGAGAGCGTGCCCTGCCCCCTGTGCAGTGAGACCTTCTCCCACCGCACACAGCTGGAGAGGCATATGGCCACGCACAAGCCAGGGAGAGATCAGTCCCAGCTTCTGAATGAAGGGGCCGGCAACCGAAAGTTCAAATGCACCGAGTGTGGAAAAGCCTTCAAATACAAGCATCATTTGAAGGAGCATCTCCGAATTCACAGCGGGGAGAAACCATATGAGTGTTCCAACTGCAAGAAGCGCTTCTCCCACTCCGGCTCCTACAGCTCCCACATCAGCAGCAAGAAGTGCATCGGTCTGATCTCTGTCAACGGACGAGTACGTAATGGAGGAGGTAACACCAAGGCTGGCTCCTCCCCTAACTCCACCGCCTCTTCTCCGGGAAGCCCCGCCCTGGCCCAGCTCCGCCACAAGCTGGAGAATGGCCGCCCCATGGGCTCCCAAGACCAGCAAAGCCACCTGGACATTAAGGCAGAGCCCATGGACTTCAATGACTACAGGCTACTGATGGCCTCCCAGTATGGCGTCGGAGGGCCAGGGGGCTATATGAACGGAGCCGGCCGAGGAGGCAGCCCCCTGGGGATCCACAGCTCCTCCCAGAGTCCCCTGCAGCACCTGAGTGGGATGGGCTTGGACCTGCCCCTGCTGGGCTACGGTTCCCTGGGGAACAACCTGAGCGAGGTGCAGAAGGTCCTCCAGATCGTGGACAACACTGTGTGCAGGCAGAAGATGGATGGGAACCCGGAGGAGATCTCCAAGCTCAGGGCCTATATGAAGGAGCTGGGGGCCCAGATGGAGGAGCAGAAGTTGGCTTTGTCCTCCCCACGTGCTGGCTTCCAGGTGGTGGGCCACGGCAGCCCCACAAAaagcataatcgactacactctGGAGAAGGTGAATGAGGCCAAGAGCCTGATCGACGACTCCAAGAGGCAGATCAACATGGACATCAAGAAGGAGAGGCTAAACCACTCGATGGATCCTGAGGAGAAGTCGCACCACGAGAGCCACCAGGTTCCATTCCTGCCTTTCTCCTGCCAGTTCTGCAAGGAGAACTTCCCAGGGCCCATCCCACTGCACCAGCACGAGCGCTATCTGTGTAAGAAGAACGAGGAGATCAACCACCTCCAGCCCAGTGAGGGTGTGCCTCCTAGCCGCAGGGGGGTGTTCCCCTCAGAGCAGCAGGCCGCTCTGCAATCCTCTCTGTCAGAGAGGGGCGCCACCAGCCCCATCAACCCTTTCAAGGACCACGTGTCAGTGCTCAAGGCCTACTTCGCCATGAACATGGAGCCCAACTCAGAGGAGCTGCTGAAGATCTCCATCGCAGTCGGCCTCCCACAGGAGTTTGTCAAGGAGTGGTTCTCCCAGTGGAAGaatcagcagcaacaacaacaacacaacaacggTAATGCTAACTCCAGGAAGCGGTCGCCACCGCCAGACCGGAGCAGTGCAGAGGAGCGCAACCACCACGGCCTGGCCAGGTCACCGATGTCCATGGCGCAACACGTGGATCGCATTATGGCACTCGCGGATTTACACGGCGGCAACACCAACGGTGACCGTGACACTTCTCACAGACATTTAAAGGCCAACCAGTTTACAGCCAACAGGCAGATGGGTGACAAACCACTAGAGACCTTGGACCACCTTAGGAGCAGCACATCATCTcctctcaatctctcctccacttcttCTAAAAACTCCCAGAGCAGCTCATACACTCCAAACAGCCTGGCCTCTGAAGGGGACGGCCATGGGGGGGACGCACCATTGGACCTTTCTCTACCAAAACACATGATGAGCAACAGCATCTCACTGGGAGAAAAGAGGTCCAAACCAAACGGCTATGTCTCAGACCGCAATGGTGACCACCACCAATCCAACCGGGAGCAGGGGACTGAGCCCATGGACTTGGCCCACATCAAAAAAGAGTTCCTGGGCTCAGGGAGAGACAACGGAGGGAACAGCGGCCACCAGATGGAAAAGAGTGCCAGCCCCATCTTTGGCATCAACCCCTTTGGTGGGGGTCACATGTACACACCTCTGCCCCCACATGGAGCGTTCCCCCCGCACAGCTTCATGCAGGCCCAGGCCAGCATCCCAGGCCTGAGGCCGTACCCAGGGCTGGATCCAATGAGCTTCCTGCCCCACATGGCCTACACTTATGCAACTGGGGCGGCCACATTTGCTGAAATGCAACACAGGTCGAGGAAGTACCAACGGAAACCAGGTTTCCAGGGGGAGCTACTGGACGGCACTGCGGACTATCTGTCAGGCTTGGAGGACCTGACAGACGAATCGCTCCTCTCCCGGAAGAAGATTAAAAAGACAGAAAGTGGCAAGCGGCCACACCAGTGCACGATCTGTAAGAAGGCCTTCAAACATAAGCACCACCTCATCGAGCACTCGCGTCTGCACTCGGGTGAAAAGCCATACCAATGCGACAAGTGTGGCAAGCGCTTCTCTCACTCAGGCTCCTACTCCCAGCACATGAACCACCGGTACTCCTACTgcaagagggaggcagaggaaaGGGAGGCGGCTGAAAGGGAGGCCCGGGATAAGGGCCCCCTGGAACCCACAGAGTTGCTGATGAGGAGGGCCTACCTGCAGGGTCTGGGGCCGCTGGGCTACTCTGACCCCGAGGACCAGCCGGAGGATGGGGGTGGCACCATTCTGAGGGATGGCACtgaaggagggatgagaggaggacgaggagagagggaagtggaCGAGACGTATGAGAAGGTGACAGACAGGCGAGAGACGGGAActttcagggagggagaggatgaggaagaggatgacaGCAGGATGGACACGGCGAGGAATGATGAGGGGAAAGATGCGGAGCATTCAATGGATGAGAGTTCAAGAGAAGGGAAAACAGACACCAAGTCGGACCAGGAAGAAGCAGATTAAGTCAATACTGCAGTCATTTGAAAAAAAGCTTTCAGCAAATATTTGTCATGTTGGGTTGTTTCATTTCCTTTTTCCATTCTTCCAACAAACATGAAACTTGCTTTGTTTTCAGATAGGCACTGCGGTGGCTCAGTCAAGCAAGCGCGAGCGCTTGCATTTAGCTTCTCAGAAGCTCATAATGATGGACTCATGCAATGTGGTGACTGCCAACATCAGAGTTGTGACGACAAGCTGGGTGGGATTGTTTAAGAATCCAcattatgcaacaaaaaaaatgaagtAATAATGATTATCATTATAATTAAAAATGAAATGAAGCTGTTTTTAATGTACAGTGTTAAATAAGGCCTAAAAGCTGTGTGGTGCTATAATGTTCTTAACCCTTGTGTTTCATTGTGTTAATACCCCAAACTAGGAAATTGCACTCTGCCCCTTTAATCactacaaaaacatttttttgaaaaaaaaaaaagcctatgTATATTTATACCGTGCTTGAAGACTCGGTAGCAGTCCGTCAGTGTTGTACTTTGTCTACCACTTACTGTGATGTCCTTGGTTCTACCACCCTTTTTGCCAGGCAAACTAACCACACAATTTTGGGCCTCACAAATTTCTTTATGTGAAGGAAACTTTAAACCTGTGTGAATTTGATATGTTGTGAGTCTTAAATTGGACCGGAATGGAGTGACAGAATGAAGGAGGGAACAATGAAATATGGAGGGCTCCGTACGTAAGACAGAGCCTTTGTATGTTTTATTTTCTCAACAGAAAGCCTTATATGCAAACCTTTTCACCTGTGCGTTTCTGCAAGTGCCATCCTTGTACAGTGTAAATCAGAGTTGATTTGTGTTATCTTTGCTCTGGCTTCAGTATTAAATAAATATTTCACCTTGTTTTCCAATTACCTATGTCAGTATTAGCATAGATTGAGACAGCAGTTCGTTAGTTTACTTATGTTTGTGcaattttctgtattttttttcatgACCTTTTGTCAGTATTACTTTTTGTTGATTTTTTTCCAAGCATAAATTACATTTCGTTTTTATTTTAAAATTACCATTTTATTTATGTGACTCATTTTATATTTcctaattttatttatttcatactgtagtgtacagtattatagttcCTCAAAAAATAGATATATTTTAGTAAAGGATTCTGTCATTGACTATTGGAGCAAATTATAAATAGAGAGCATTCTATGGTATTTGGAAAAAAATTCATTGTTAAAATTTGAAATTTTGTTCtcaatgttttatttcctttcaACTACTGGAAATTCTAAATTTGGGGAACTTTTGATACAATATTGTGAAAACACTGTATTTTTTGACAATAAAAATCCACTTTATTCATCCAGGTAAAGAGATGAAGATAGAGGGACTGTTGATAATGAAAAATTCCTGAAATGTCTGAAGTATTATTGAATTTTTAATTTCTCTTGGAAATGACCATGCTCGAATAAATGTAGCCAAATAAAATTTTAATAAAGCTGTGTTATTCTTCTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309332 lncRNA downstream 38555 52789001 ~ 52789228 (-) True G272417
TU309299 lncRNA downstream 51249 52775593 ~ 52776534 (-) True G272384
TU309327 lncRNA downstream 54493 52773086 ~ 52773290 (-) True G272412
TU309323 lncRNA downstream 57240 52770332 ~ 52770543 (-) True G272408
TU309283 lncRNA downstream 120361 52693956 ~ 52707422 (-) False LOC110520182
TU309360 lncRNA upstream 1988 52877758 ~ 52878101 (-) True G272445
TU309361 lncRNA upstream 2516 52878286 ~ 52878572 (-) True G272446
TU309376 lncRNA upstream 19627 52895397 ~ 52896059 (-) True G272461
TU309378 lncRNA upstream 22162 52897932 ~ 52898246 (-) True G272463
TU309379 lncRNA upstream 22612 52898382 ~ 52898611 (-) True G272464
XM_036974567.1 mRNA downstream 1394 52780781 ~ 52826389 (-) True gtdc1
XM_036974569.1 mRNA downstream 1435 52780781 ~ 52826348 (-) False gtdc1
XM_036974566.1 mRNA downstream 1436 52780781 ~ 52826347 (-) False gtdc1
XM_036974565.1 mRNA downstream 1437 52780781 ~ 52826346 (-) False gtdc1
XM_036974564.1 mRNA downstream 1438 52780781 ~ 52826345 (-) False gtdc1
XM_021597342.2 mRNA upstream 508771 53384541 ~ 53394318 (-) True LOC110520193
XM_021597344.2 mRNA upstream 661907 53537677 ~ 53562438 (-) True LOC110520195
NM_001160552.1 mRNA upstream 785330 53661100 ~ 53663978 (-) True ubxd2
XM_036974578.1 mRNA upstream 795995 53671765 ~ 53746869 (-) True LOC110520198
XM_021597349.2 mRNA upstream 941341 53817111 ~ 53864985 (-) True rab3gap1
TU309282 other downstream 118967 52708183 ~ 52708816 (-) True LOC110520182
TU307459 other downstream 1227553 51597935 ~ 51600230 (-) True il1rl1
TU307458 other downstream 1227885 51597399 ~ 51599898 (-) False il1rl1
TU307414 other downstream 1353644 51473324 ~ 51474139 (-) True fgf9
TU306786 other downstream 1698473 51128440 ~ 51129310 (-) True LOC110520160
TU309646 other upstream 374156 53249926 ~ 53251084 (-) True G272713
TU311493 other upstream 1804148 54679918 ~ 54682805 (-) True G274344
TU312299 other upstream 2227724 55103494 ~ 55119212 (-) True LOC110520227
TU312498 other upstream 2534373 55410143 ~ 55411487 (-) False G275250
TU312500 other upstream 2534373 55410143 ~ 55411487 (-) True G275250

Expression Profile