RNA id: TU309775


Basic Information

Item Value
RNA id TU309775
length 1982
lncRNA type antisense_over
GC content 0.40
exon number 1
gene id G272832
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 53373540 ~ 53375521 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTCTTCCATGAATTGTACAGCATTTATTTAAGGCAACATCTGGCATGATATGTTGGCATTCAGGTCACAGTACAAAAGTCCTGGCAAAATATTTAAAAGGGAAAATCTAGTATTGCCTGATTGGTTTAAAGGGACACAACATGTTTTAGCCCTTATGTTACCCCATAAAAAAACGAAATGTAATTTATAAAATGTTAACAGAGCAAACTACAGTAGGTAAAAAATGTTGCTTTCTGTAAATCATGCTTCACTGTTTTCCTTTTGCTGCTTGGCTGGAGTCCTACTGAACAGACAGtgtggtagggagggaggagggcagacctgggttcagatactatttgaaatctttcaaatactttgatcgtttgctttagtctgcctgAAGTAATATATGAGCATGGTTtgccattttgggactattctattggtccatTGAGCCAAACGATGATTTAAAATAGTaaatgaacccaggtctggaggGGGGAAGTGACCAGTCTCCTTTATGTCTCGGGCGGTCAGCCTAAATAAATCAGAAATCCTGGAGAACAATAACACTGTATTTGCTAACTCTGCATTTTTCCCGCCTGGACAGGCGACCACACCGCCAACAGAGAGTGATGGATGAGAAACATATCACAGAACAGAGCACAGTACAAACATCAGAGGGACATGTCACAAGAACGTACAAAAACATTAAAACACTTGTGAGAAAAAGTCTCCTGAAGAGCACGTAGTGTCAGTAATTAATTGTGTGCGCACAAAGCAAGTCATTTATTGTTGCCTCTCGCTAAAACTGAAATGACGAGACATAAAAACATGCTATTTGTCCTGCAGTTACAGCACAGCTTCCAAAGCCTAGGCCAAACAAAGTGCTGCACTGAGGTATGTGGGTAGCTGTATCATGTGGAAAGTCAGATTCATTTTTCATCATCAGTCAATTTTGAAGCTAAAATAGACCTGTAATTAACTTTTATCCTTTTTTTTTAGGTTTTGAGGAAATAGTCTTCCCACAACAGAAACACCAAAGGGTTAAGTGTTTGTTTGATAAGCGCCCGGCTCTCTTTCCATGTCGGTAAAAATACTTTCTGCATACTAGACGTAAAAGGACGCGCAGCGCCTATGTCACCTGTTCCTGCTGGAAAATAAAAGATGTAGTCTACACTTACATGCTATTATATAAACCTACCGGCGTAACGTTTCACACAGACATATTCACCTTCTAACAACAATGttccataaaaaaataaatactatgtatatgtacatatgtGTCAAACATACAACATGGCGCGTGGACTCgcaaatgtgaaaatgtaaaAACATAAAAACGTTAAACCAGACAAATCCTCATAGAAGCTGAAGCTGTTCTTCAATTCTTCCTCATCGCTGGAACATGTTGAAACTCTTACAGTGTATAGCCTACTGTCGAATCCAAACATGCCACAACACATTTCAAGGTTTACAGTTTCCCCTCCTTCTGTCCCGGTGCAGAAGACTAGTAGGGGGAGAATTATGTCATTTCATACTTGGATGTTTATTATGTTTTATCCTTCAAGATTGACAGCCATATGGCCTGTGTTTTAGAAGCAGTATCAGTGTCAAGTTCTAAGTGCACATTTTATTGAAACCAAGCATAATGATGAAAGGGAATCAAAACTGGATTCCTTTTTAATTAAAAGGAAAATAAACTGTCAAAAACTGCAGTGAGTACTATTTCCATAGGGTGTAGATTGAATCGATTAACAGTTGGATCGGAATACATTAACAGTTGGGTCAGGCCTTCAATTGGTAAAGACAATTGTATATGTCAGTATCTCTCTCCACTTCTCAAACATAGCTGGAGATGAGGAGGGTGAGGAAAAGGAGGCAGTATATTAGTCTGTAGCTCTGTGGGATTCCTGTGGTGCCGCTGAGAGGTGAGGTGGTGGCGAACACGGCCTCCGTCTCATTCCAGGGGAGAGGAAGGTTACAGATATTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309717 lncRNA downstream 35870 53336680 ~ 53337670 (-) False G272774
TU309714 lncRNA downstream 35870 53336705 ~ 53337670 (-) True G272774
TU309713 lncRNA downstream 35978 53336705 ~ 53337562 (-) False G272774
TU309663 lncRNA downstream 49203 53271553 ~ 53324337 (-) True G272729
TU309679 lncRNA downstream 82460 53288343 ~ 53291080 (-) True G272741
TU310297 lncRNA upstream 21558 53397079 ~ 53397297 (-) True G273298
TU310456 lncRNA upstream 215918 53591439 ~ 53591680 (-) True G273454
TU310466 lncRNA upstream 226557 53602078 ~ 53602367 (-) True G273464
TU310512 lncRNA upstream 270412 53645933 ~ 53651951 (-) True G273493
TU310545 lncRNA upstream 390839 53766360 ~ 53766580 (-) True G273523
XM_021597322.2 mRNA downstream 497770 52827783 ~ 52875770 (-) False zeb2a
XM_036974563.1 mRNA downstream 497770 52827783 ~ 52875770 (-) True zeb2a
XM_021597320.2 mRNA downstream 497771 52827783 ~ 52875769 (-) False zeb2a
XM_021597321.2 mRNA downstream 498620 52827783 ~ 52874920 (-) False zeb2a
XM_021597323.2 mRNA downstream 529126 52827783 ~ 52844414 (-) False zeb2a
XM_021597342.2 mRNA upstream 9020 53384541 ~ 53394318 (-) True LOC110520193
XM_021597344.2 mRNA upstream 162156 53537677 ~ 53562438 (-) True LOC110520195
NM_001160552.1 mRNA upstream 285579 53661100 ~ 53663978 (-) True ubxd2
XM_036974578.1 mRNA upstream 296244 53671765 ~ 53746869 (-) True LOC110520198
XM_021597349.2 mRNA upstream 441590 53817111 ~ 53864985 (-) True rab3gap1
TU309646 other downstream 122456 53249926 ~ 53251084 (-) True G272713
TU309282 other downstream 664724 52708183 ~ 52708816 (-) True LOC110520182
TU307459 other downstream 1773310 51597935 ~ 51600230 (-) True il1rl1
TU307458 other downstream 1773642 51597399 ~ 51599898 (-) False il1rl1
TU307414 other downstream 1899401 51473324 ~ 51474139 (-) True fgf9
TU311493 other upstream 1304397 54679918 ~ 54682805 (-) True G274344
TU312299 other upstream 1727973 55103494 ~ 55119212 (-) True LOC110520227
TU312498 other upstream 2034622 55410143 ~ 55411487 (-) False G275250
TU312500 other upstream 2034622 55410143 ~ 55411487 (-) True G275250
TU315090 other upstream 3895261 57270782 ~ 57297762 (-) True si:dkey-91i10.3

Expression Profile