RNA id: TU309679


Basic Information

Item Value
RNA id TU309679
length 2696
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G272741
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 53288343 ~ 53291080 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGAAACAAAGTGTTCAGTCTATGGATCCAAGAttataatgtaggcctatttaaATAAGTAAAGGGAAAGAAATAGGCTATTATGTTGGCTAACACCAGACTTGTTCAGTTTTATCTGTCTTTATTTTAATGAATCTTGACATCTGAAATTGCTATCTTACACCATGCAGTCATCATCAACAGCACTATTTTGTCCGAACAGAACAGTGTGGTAGCCTATTAGGTACAGGACAGAGATACATCTTGTGGTGAACATATGGCGTATGATGAGACAAATGGCTAAATATGATTTATGTCAAGAGTTTCTCTTTAACTTATGAAAACCGTTGTCTGAACAACATTGTCTCTTGTCCCATAAACCTCATTGATAGTTGACTCACAAGCGCTTTCTTTGCAAATGTTTCAGACTAAGAGTTACTAACGGTGACCAAAGACACTTCAGAAGCAAGAGcgacagatggagagaagagaaagagagagagcgagagagaagcgataagataaattacatttaaaacagGAAATGACATTCAGCTCAGGAATTTTACAGACGCCAACAGTCATCCTTCAGTCATCATGATAATACCTTAAGGAGGGGTCATTCATATGCGTAAGTAAATGAATGCATGACTTTCAACAGGAAACCAGTATGAGAGGTGAACGAATGCAAGACCCTGTTCCAAGACACCTTAATAGAACACATTTCACAACAGCATAACtcattattcactgtgtatttagacattataataaaaaaaacattgaatctttatctttaactctgcattgttggaaaatgacccgtaagtaagcatttcactgttagtctacacttgttgtttacGAACCATGTGAAATGTGACTTAATTTTTTTCCTTACCTCATACGAAGTTGAGAAAAAACACTTATTTAGACTTTGTGAACTAGAATGAAAGAGGCAGTCGAAAAGCACTTGATTTGATATACGACAGAGAGCAGATATATACAAAAACATTAGTCTGAATATCCTTTAGCACCATGAATACAGGTGGACCACAAGTAGACAAGTGACATGTAGGAAATACTCAAGATCCCAGACCAATGACAACCTTATATAATTTGTAAACCATTCTGATTGTGTTACTTCTTTAGAGTGGAGAGAGTAAATCCAGAAAGACCAAACATGAAATCCCTGATAAACCCTAGAACTCAAACACTTCAGTTCCGACGAGCCCATACACTGCCAGATCTACTGATGGGCTGATCAGCATCATTGCAGTGGGGAAACAACCAATCACACATCTCATCATCTCTTCAACTTCAGATTACCACAGGTATTCAACCCTCTTTTTCTCCACCTTCATTTATAAAAGATAATTGACGATACACCTTCTTTTAAAATAACAACCTGGCATGTGAGACATTCAGTCTAAAGCAGCAAAAAACGAAACCCAGCAAAGGAAGGAAATACGGTATAATAACCATGTTAGGCATTACAAAATACCTATATATCTTTTAGGTCTAATTCCTCACATTTCTTGGAAATGTTCATAAACTGTACGATCCGTCAGTTTTGGCTTCATAGCACCTCATTAATGTATTTCGATTTGGTCTGCATGTAACACAAATGAAAAGACTCAATGCCCCGAAACCAAGAATATAGAAAATACTTGCAGGAAATTCAAAGTTCCGTCTCAACAATCTGCTCCAATGCTGTCTTAAAAGGTTGTTACTGTGGCTTGGGATACATACTCtgatttagaaatgtttacaataaGAAAGTTGATCTGTATCTTAACAATATGCATCTCAAGCAGCAGTAGTGTGTGATATTGTCAAAGCACATGTTCAAATAACTAACATCAATGTTGCataaataaaatgtgtaaaataaaTAGCAGATATCTTCATCAAAGTTGCGCAAATAATAATCATTAAATCAACTAAATTCAGTACAAAACAGAGTGCTACTTTCAAAACCACTACTTTTAAAGGTGATcttaaacattcataaaaaaaaacactatgtGGGTTCTAAAACACACTAGAATACTAACTGTGTCTCCATACGTTCATCCTTAACAACATCCGTGTCCCTTCTATTGTTTCTGAGGGTATTGGTGTTagacggaaacccctaaacaacCATATTCAATGTTACCCTCTAAACCACCCTTTTCTCATAATTTATCTTCAAGGAAAACCAGCCTGTTTCACAAGATACAACACTGAACAAGCACCAGAGAGACATCACCCTCAACAACATATAGGAAGGAGCTCATTACACAtttcagtctgagagagagagggagagcgagagagcgagagagagagagagagagagagagagagagagagagaggcatatcGATAGAGCACCAGAaacagaggcagagtgagagagattcAAGAAGGCGAAAGATGAAAAACACTTGTTCAACATTACGGAGCCTCTCTTTCCTCTTGACCATGAGGATAGGAGACCTATTAATAAAGATATGAGCCAGAGTGTGTTTTTTTCAGGAATGAGGAGTCTGGAGTCCCAGTAAAGGCAGAgtggtgagagaaggagaggaggattggtcccagtggttagagagagagatagcaaggTCCATGGGGGAAGAGAATATCCCAGACAGTCCTGGAGTGGGGTCCGGTCCTAAAGGGAGAGGAGATCTGGTCTGTACATCCAGCTGGAAAATCCAGCTTCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309577 lncRNA downstream 68833 53218853 ~ 53219510 (-) True G272659
TU309591 lncRNA downstream 99076 53189036 ~ 53189267 (-) True G272673
TU309590 lncRNA downstream 99898 53188231 ~ 53188445 (-) True G272672
TU309583 lncRNA downstream 107598 53180431 ~ 53180745 (-) True G272665
TU309578 lncRNA downstream 113741 53174280 ~ 53174602 (-) True G272660
TU309717 lncRNA upstream 45600 53336680 ~ 53337670 (-) False G272774
TU309713 lncRNA upstream 45625 53336705 ~ 53337562 (-) False G272774
TU309714 lncRNA upstream 45625 53336705 ~ 53337670 (-) True G272774
TU309775 lncRNA upstream 82460 53373540 ~ 53375521 (-) True G272832
TU310297 lncRNA upstream 105999 53397079 ~ 53397297 (-) True G273298
XM_021597322.2 mRNA downstream 412573 52827783 ~ 52875770 (-) False zeb2a
XM_036974563.1 mRNA downstream 412573 52827783 ~ 52875770 (-) True zeb2a
XM_021597320.2 mRNA downstream 412574 52827783 ~ 52875769 (-) False zeb2a
XM_021597321.2 mRNA downstream 413423 52827783 ~ 52874920 (-) False zeb2a
XM_021597323.2 mRNA downstream 443929 52827783 ~ 52844414 (-) False zeb2a
XM_021597342.2 mRNA upstream 93461 53384541 ~ 53394318 (-) True LOC110520193
XM_021597344.2 mRNA upstream 246597 53537677 ~ 53562438 (-) True LOC110520195
NM_001160552.1 mRNA upstream 370020 53661100 ~ 53663978 (-) True ubxd2
XM_036974578.1 mRNA upstream 380685 53671765 ~ 53746869 (-) True LOC110520198
XM_021597349.2 mRNA upstream 526031 53817111 ~ 53864985 (-) True rab3gap1
TU309646 other downstream 37259 53249926 ~ 53251084 (-) True G272713
TU309282 other downstream 579527 52708183 ~ 52708816 (-) True LOC110520182
TU307459 other downstream 1688113 51597935 ~ 51600230 (-) True il1rl1
TU307458 other downstream 1688445 51597399 ~ 51599898 (-) False il1rl1
TU307414 other downstream 1814204 51473324 ~ 51474139 (-) True fgf9
TU311493 other upstream 1388838 54679918 ~ 54682805 (-) True G274344
TU312299 other upstream 1812414 55103494 ~ 55119212 (-) True LOC110520227
TU312498 other upstream 2119063 55410143 ~ 55411487 (-) False G275250
TU312500 other upstream 2119063 55410143 ~ 55411487 (-) True G275250
TU315090 other upstream 3979702 57270782 ~ 57297762 (-) True si:dkey-91i10.3

Expression Profile