G272741


Basic Information

Item Value
gene id G272741
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 53288343 ~ 53291080 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU309679
TTTGAAACAAAGTGTTCAGTCTATGGATCCAAGAttataatgtaggcctatttaaATAAGTAAAGGGAAAGAAATAGGCTATTATGTTGGCTAACACCAGACTTGTTCAGTTTTATCTGTCTTTATTTTAATGAATCTTGACATCTGAAATTGCTATCTTACACCATGCAGTCATCATCAACAGCACTATTTTGTCCGAACAGAACAGTGTGGTAGCCTATTAGGTACAGGACAGAGATACATCTTGTGGTGAACATATGGCGTATGATGAGACAAATGGCTAAATATGATTTATGTCAAGAGTTTCTCTTTAACTTATGAAAACCGTTGTCTGAACAACATTGTCTCTTGTCCCATAAACCTCATTGATAGTTGACTCACAAGCGCTTTCTTTGCAAATGTTTCAGACTAAGAGTTACTAACGGTGACCAAAGACACTTCAGAAGCAAGAGcgacagatggagagaagagaaagagagagagcgagagagaagcgataagataaattacatttaaaacagGAAATGACATTCAGCTCAGGAATTTTACAGACGCCAACAGTCATCCTTCAGTCATCATGATAATACCTTAAGGAGGGGTCATTCATATGCGTAAGTAAATGAATGCATGACTTTCAACAGGAAACCAGTATGAGAGGTGAACGAATGCAAGACCCTGTTCCAAGACACCTTAATAGAACACATTTCACAACAGCATAACtcattattcactgtgtatttagacattataataaaaaaaacattgaatctttatctttaactctgcattgttggaaaatgacccgtaagtaagcatttcactgttagtctacacttgttgtttacGAACCATGTGAAATGTGACTTAATTTTTTTCCTTACCTCATACGAAGTTGAGAAAAAACACTTATTTAGACTTTGTGAACTAGAATGAAAGAGGCAGTCGAAAAGCACTTGATTTGATATACGACAGAGAGCAGATATATACAAAAACATTAGTCTGAATATCCTTTAGCACCATGAATACAGGTGGACCACAAGTAGACAAGTGACATGTAGGAAATACTCAAGATCCCAGACCAATGACAACCTTATATAATTTGTAAACCATTCTGATTGTGTTACTTCTTTAGAGTGGAGAGAGTAAATCCAGAAAGACCAAACATGAAATCCCTGATAAACCCTAGAACTCAAACACTTCAGTTCCGACGAGCCCATACACTGCCAGATCTACTGATGGGCTGATCAGCATCATTGCAGTGGGGAAACAACCAATCACACATCTCATCATCTCTTCAACTTCAGATTACCACAGGTATTCAACCCTCTTTTTCTCCACCTTCATTTATAAAAGATAATTGACGATACACCTTCTTTTAAAATAACAACCTGGCATGTGAGACATTCAGTCTAAAGCAGCAAAAAACGAAACCCAGCAAAGGAAGGAAATACGGTATAATAACCATGTTAGGCATTACAAAATACCTATATATCTTTTAGGTCTAATTCCTCACATTTCTTGGAAATGTTCATAAACTGTACGATCCGTCAGTTTTGGCTTCATAGCACCTCATTAATGTATTTCGATTTGGTCTGCATGTAACACAAATGAAAAGACTCAATGCCCCGAAACCAAGAATATAGAAAATACTTGCAGGAAATTCAAAGTTCCGTCTCAACAATCTGCTCCAATGCTGTCTTAAAAGGTTGTTACTGTGGCTTGGGATACATACTCtgatttagaaatgtttacaataaGAAAGTTGATCTGTATCTTAACAATATGCATCTCAAGCAGCAGTAGTGTGTGATATTGTCAAAGCACATGTTCAAATAACTAACATCAATGTTGCataaataaaatgtgtaaaataaaTAGCAGATATCTTCATCAAAGTTGCGCAAATAATAATCATTAAATCAACTAAATTCAGTACAAAACAGAGTGCTACTTTCAAAACCACTACTTTTAAAGGTGATcttaaacattcataaaaaaaaacactatgtGGGTTCTAAAACACACTAGAATACTAACTGTGTCTCCATACGTTCATCCTTAACAACATCCGTGTCCCTTCTATTGTTTCTGAGGGTATTGGTGTTagacggaaacccctaaacaacCATATTCAATGTTACCCTCTAAACCACCCTTTTCTCATAATTTATCTTCAAGGAAAACCAGCCTGTTTCACAAGATACAACACTGAACAAGCACCAGAGAGACATCACCCTCAACAACATATAGGAAGGAGCTCATTACACAtttcagtctgagagagagagggagagcgagagagcgagagagagagagagagagagagagagagagagagagaggcatatcGATAGAGCACCAGAaacagaggcagagtgagagagattcAAGAAGGCGAAAGATGAAAAACACTTGTTCAACATTACGGAGCCTCTCTTTCCTCTTGACCATGAGGATAGGAGACCTATTAATAAAGATATGAGCCAGAGTGTGTTTTTTTCAGGAATGAGGAGTCTGGAGTCCCAGTAAAGGCAGAgtggtgagagaaggagaggaggattggtcccagtggttagagagagagatagcaaggTCCATGGGGGAAGAGAATATCCCAGACAGTCCTGGAGTGGGGTCCGGTCCTAAAGGGAGAGGAGATCTGGTCTGTACATCCAGCTGGAAAATCCAGCTTCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309679 True 2696 lncRNA 0.38 2 53288343 53291080

Neighbor

gene id symbol gene type direction distance location
zeb2a LOC106586328 coding downstream 412573 52827783 ~ 52875770 (-)
gtdc1 gtdc1 coding downstream 461954 52780781 ~ 52826389 (-)
LOC110520182 NA coding downstream 579597 52693956 ~ 52708816 (-)
LOC110520181 adprh coding downstream 596165 52686923 ~ 52692178 (-)
LOC110520175 LOC106586279 coding downstream 1212667 51956334 ~ 52075676 (-)
LOC110520193 LOC106586318 coding upstream 93461 53384541 ~ 53394318 (-)
LOC110520195 LOC106586316 coding upstream 246597 53537677 ~ 53562438 (-)
ubxd2 ubxd2 coding upstream 370020 53661100 ~ 53663978 (-)
LOC110520198 LOC106586311 coding upstream 380685 53671765 ~ 53746869 (-)
rab3gap1 LOC106586310 coding upstream 526031 53817111 ~ 53864985 (-)
G272659 NA non-coding downstream 68833 53218853 ~ 53219510 (-)
G272673 NA non-coding downstream 99076 53189036 ~ 53189267 (-)
G272672 NA non-coding downstream 99898 53188231 ~ 53188445 (-)
G272665 NA non-coding downstream 107598 53180431 ~ 53180745 (-)
G272660 NA non-coding downstream 113741 53174280 ~ 53174602 (-)
G272774 NA non-coding upstream 45600 53336680 ~ 53337670 (-)
G272832 NA non-coding upstream 82460 53373540 ~ 53375521 (-)
G273298 NA non-coding upstream 105999 53397079 ~ 53397297 (-)
G273454 NA non-coding upstream 300359 53591439 ~ 53591680 (-)
G273464 NA non-coding upstream 310998 53602078 ~ 53602367 (-)
G272713 LOC106586324 other downstream 37259 53249926 ~ 53251084 (-)
il1rl1 il1rl1 other downstream 1688113 51596933 ~ 51619476 (-)
fgf9 NA other downstream 1814204 51471899 ~ 51478510 (-)
LOC110520160 LOC106586095 other downstream 2159033 51126600 ~ 51130404 (-)
G274344 LOC106586294 other upstream 1388838 54679918 ~ 54682805 (-)
LOC110520227 plekhm3 other upstream 1812414 55068639 ~ 55122013 (-)
G275250 NA other upstream 2119063 55410143 ~ 55411487 (-)
si:dkey-91i10.3 LOC106586420 other upstream 3979702 57270782 ~ 57297762 (-)
G277673 LOC106586423 other upstream 4111904 57402984 ~ 57403575 (-)

Expression


Co-expression Network