LOC110520253 (LOC106586384)


Basic Information

Item Value
gene id LOC110520253
gene name LOC106586384
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 56040760 ~ 56041698 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597429.2
ATAAAAGTAAGGGTTAACACAGACAGGACATCAGTTTAGCAACAGCACAGCTCAAAGAAACAATCGCAACCATGATGGGCAAGATCATCTTCTACGAGGACAAGAACTTCCAGGGTCGTTCCTATGAGACCAGCCAGGACTGCCCTGACATGTCCTCCCACCTGAGCAGGTGCCACTCCTGCAGGGTTGAGAGTGGCTGCTTCATGGTCTACGACCGCCCCAACTTCATGGGAAACCAGTACTTCATGAGGAGGGGAGAGTACTCAGACTACCAGCGTATGATGGGAATGAACGACTGCATCAGGTCCAGCCGCATGATCCCCATGCACCGCGGAAACTTCAGGATGAGGATCTACGAGAGGGAGAACTTCGGAGGTCAGATGCACGAGATGATGGACGACTGTGACTCCATCCAGGAGCGTTACCGCATGTCCGACTGCCAGTCCTGCAACGTGATGGATGGCCACTGGCTGATGTACGAGCAGCCCCATTACAAAGGCAGGCAGATGTACATGAGGCCTGGAGAGTACAGGAGCTTCAGGGATTTGGGCATGGGAATGGGAGGCATGAGCGGTGGCATGAGGTTCATGAGCATGAGGCGTATCATGGACAACATGACTATGTAATTTCCTCAATTGTTGTATGAAAATTGTTGATTAAACGTATTTACACTGCTAAA

Function

NR:

description
gamma-crystallin M3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597429.2 True 679 mRNA 0.51 3 56040760 56041698

Neighbor

gene id symbol gene type direction distance location
LOC118936311 LOC106586361 coding downstream 22388 56017260 ~ 56018372 (-)
LOC110520252 LOC106586360 coding downstream 35975 56003832 ~ 56004785 (-)
LOC110505323 LOC106586359 coding downstream 41199 55997766 ~ 55999561 (-)
LOC110520250 LOC106586358 coding downstream 52712 55987103 ~ 55988048 (-)
LOC110520251 LOC106586357 coding downstream 55283 55983873 ~ 55985477 (-)
LOC110520254 LOC106586385 coding upstream 6113 56047811 ~ 56049145 (-)
LOC110520260 NA coding upstream 453453 56495151 ~ 56578650 (-)
arl5a arl5a coding upstream 547859 56589557 ~ 56600573 (-)
LOC110520263 LOC106586393 coding upstream 559106 56600804 ~ 56650953 (-)
LOC110520265 LOC106586394 coding upstream 610671 56652369 ~ 56667591 (-)
G276518 NA non-coding downstream 63087 55977460 ~ 55977673 (-)
G276497 NA non-coding downstream 96601 55943419 ~ 55944159 (-)
G276420 NA non-coding downstream 103738 55936617 ~ 55937022 (-)
G276434 NA non-coding downstream 106630 55933836 ~ 55934130 (-)
LOC110520241 LOC106586374 non-coding downstream 116901 55890382 ~ 55923883 (-)
G276661 NA non-coding upstream 139060 56180758 ~ 56181147 (-)
G276664 NA non-coding upstream 144454 56186152 ~ 56186362 (-)
G276675 LOC106586387 non-coding upstream 158475 56200173 ~ 56200414 (-)
G276689 NA non-coding upstream 175540 56217238 ~ 56217453 (-)
G276722 NA non-coding upstream 230653 56272351 ~ 56361440 (-)
G275250 NA other downstream 629273 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 921548 55068639 ~ 55122013 (-)
G274344 LOC106586294 other downstream 1357955 54679918 ~ 54682805 (-)
G272713 LOC106586324 other downstream 2789676 53249926 ~ 53251084 (-)
LOC110520182 NA other downstream 3331944 52693956 ~ 52708816 (-)
si:dkey-91i10.3 LOC106586420 other upstream 1229084 57270782 ~ 57297762 (-)
G277673 LOC106586423 other upstream 1361286 57402984 ~ 57403575 (-)
G277749 LOC106586429 other upstream 1542688 57584386 ~ 57589183 (-)
G284018 NA other upstream 6672877 62714575 ~ 62715177 (-)
G286522 NA other upstream 8927851 64969549 ~ 64970755 (-)

Expression


Co-expression Network