LOC110520318


Basic Information

Item Value
gene id LOC110520318
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 61506974 ~ 61548252 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110520318
acccaacaccccccatcaccccgagaacaccatccccacagtgaagcatggtggtggcagcatcatgctgtggggatgtttgtcatCGACAGGGTCTGGGAAACAGGTCAGAATTggaggaatgatggatggcactaaatacagggaaattcttgagggaaaccgggatcaatcttccagagatttgagactggaacggaggttcaccttccagcaggacaatgaccctaagcatactgctaaagtgaTGAGGGCTGGATCCAGGATGTCTCTAgcgggaacccagcacctctcctccgggtcataaccctcccagtcaaccaggtactggaaacccctgccccgtGGTCGAACACCCAGGAGACGTTTTACCGTGTAGGCCGGATGGCCATCAATGACACGGGGAGGGGGGTACGGGGTAACACAAGACAGACAGCAGTGGAACTCAGGACTTTGGAGATTGGAATAGGGCCAATGAAATGAGGGAACAGTTTGCGGGACTCTACCTGAAGGGGCAGATCCCGTGTGGACAGCCATACCCACTGCCCAATGAGGTAGCGGGACCTGGGGTCTGACGACGGTCCACTAGTCGACGATACCTGGAGTTGGTCTTGCGAATAGCCGCCCTGGCGCTTCTCCGGGTATGTTGACAGCGggggacaaacatctgggccgagggtatgCTGACCTCCTGTTCTTGTTCcgggaagagtggaggctgatacCCCATGGAGCACTCGAATGGAGGGAGACCCGTGGCCGAACAAGGAAGGGTGTTCCTGGTATACTCCACCCAAACCAGTTGTCGGCTCCAGGTAGTGGATTGGTTGAGACCAGGCATCTCAGGGTGGTTTCCAGGTCTTGGTTGGCTCGCTCTGACTGACCGTTAGTTTGGGGATGGAATCCGGATGACAGACTGCCCGATGACCCAATACGGGTACAGATTGCCTTccagaactgagacgagaaccCCGATTGAATCCATGGATCTGGAAGacatgctgcaccatgagctgggacGTCTCCTTGGTTGAAGGTAGTTTagggagagggatgaaatgggtgGCCTTGGAGAACTGATCAACAACCATCAGAATGacagtgttgccatcagacggatGGAGCCtcagtgacaaagtccagagatATATGAGACCAGGGACGATGAGGGACCGGTAGAGGCTGAAGGAGGCCAGAAGGAGCTTGCCATggagtcttgttctgagcacaCACTGTGCATGCGGCGACGAAGGCAGAGACGTCAGGAAccatggtgggccaccagaaacgttgTCGGAGGAAAGCTAGTGTACGACGGAACCCTGGATGACAGGTTTCcagaacaggcccaaatccctgaaGGTGTTTGTGAACCCTACCAGCCATAAGAAAGAGGCCTATCAGATCTGCAGAGACTATGTTGCACCACTGTTTCAGCTAGCAGACATCAAGGCTGATGTCACCAgctccactgaCACGGTGACGTGTTCGTTCTGTCTATGGCATATGGCACCTTGTTACCACTGCAATGCACATCATCATGGGAGGTAGATGTGTGTAGTTTCAGTTCTCTTGGTCGCCTCTTGCATTTCGGCTTCTATGCCATGTTCGGTTTCGGGGAGGTGGACGCTGGCCCTGGCGGAAAGGCATCAATGGATACCAGCTGGGCAGAAACGGGAGTTCACTGTGATCAAAACGCTAGCAAACCTCAAACCTGAAGACTGTGAATTGTCCTATCTTCCAGTGAAGAAAGTCCAGACTGAAATGCTGGATCTAGTAAATGTGACACTGTCCGTCACTGAAACCCCGTCTTCTCTAGAAGAGCAAGAGTTGTGGATGACCAACCAGGGTCTGTTCCTCAATGTCAGCATCATGGCCATCCCCTGTCTCTGCTCCATGGCCCCCAGGGGCCTGGCCCCTAACACCAGattgAACAATGGTAGCATGGCCTTGATCGCAGCAGGAAACACTTCCAGGTCAGAGTTCATCAAACACCTGAAGAGATACAACAGTGTAaacaaccagttcAGTTTCTCCTTCGTAGAGACACACATGGTGCGAGCTGTGAGGCTTCGCCCCCGCTCTCAGAGGAGCTGGTCTGACGATGTCTGCGAGGACAACGGAGAGTGTGAATCTAAGAACACACCCATAATCTCCTCAGAGGGGACCTAGCCTTGGAACGTAAACGGAGACCTACGGGAGGTGCCCTCAGAGCTACTCATCAGGTTCAGCTCTTGTTCTTGACTTGGCCCAAAGCACCACAGCACCTGCACTGATAAACCTCATATGTTAGTGGCTGGATTCAATCTGTATTGCTGAAGTTCAGAGATGTAGCACGGTTGAAATTTAAATATAATGTTCCCGTGTTCGCAGAGACTGTATTGACGGTAatcgctgcatatgtcggctcaatcagaaatGACCTAGGGGTTGAATTAATAAAGCCTCTctgagtagaagtgctgatcctGAAAGTGATCCTAaatcagcagtcctactctgagacgctgtgTGAACACTGGCCGATATATAAGGTACAAATCTATCCTTCAGCTGGTCTAAAGCCCCATAGCACCTGTCAGATAGACCTTCAACCTGGATACAACCCCTGTCTCAAATAACATGTTACCAAAGCAGTGACCTAACGCTGCTCACTATGTATAGCCCTACCTGTAATCTAATGGTCATATTAATCTGGGTTTAATTGACACCCCACAAAGAGAGTTCTTAGAGGTCATGGTCAGTATAATTTCACCGTCTTTTTGATCATGTATTTAGCAGTACTGTTAATTTGTCTGTTAGATATGGGACATTTAAAACCTCTTTAACTGATTTATTTGTTTCACCAGCAGGATAGATCCCCAACTCCCGACCCTGTTTGTTTCACCACCAGGATAGATCCCCAACTCCCGACCCTGTTTGTTTCACCAGCAGGGTAGAGCCTCAACTCTTGACCCTGTTTGTTTCACCGCCAGGATAGATCCCCACCTCCCGACCCTGTTTGTTTCACCACCAGGATAGATCCCCAACTCCCGACCCTGTTTGTTTCACCACCAGGATAGATCCCCAACTCCCGATCTTATTTGTTTCACCACTAGGATAGATCCCCAACTCCCGACCCTGTTTGTTTCACCACCAGGATAGATCCCCAACTCCCGACCCTGTTTGTTTCACCAGCAGGGTACATCCTCAACTCCTGACCCTGTTTGGAGTGGACATCGAGGAGGCAGAGGAGGCACACATCAAGTGCAGCTGCATTTAACACTGTCTGTAGAGTGGAATCGATACCATTTAAAACTGTCTAAAGGGTGGAGGAGTCTTTACACATATCAACCTACACTACCACTGAATGTAACAAACAGGATTTCCTACTGTACTCTAGAAGAAACAGTCTTCAGTTTACAGACTGTCTACAGTTAAAACAGTCTACAAGAGAGGAGTCTATAGACACAACCTAAAACGGTCTCCATGTAGAGTTTATCTATAATGCAGAACCTCAGGTTTCACTGCCACTGAATGTTACCGACAGGCATGACTACTGTACGACACTGTGAATGTTAGACATCAAATAAccaatgacagacagacacattaaatATAAAAAGTTCATTTTTACACGCCACACActtatttattaaaaataaaattataATTTCATTTGATTGAAATTCAAATTGGAATGTGCCCCCTTTATTTTTGTCATAACTGACAACTTGGTCAGGAAAGGTTGACTCCCTGAATTAACTGTCCTGAACCTTAAAATACAAGCAGTAAAAACATGTTACTAATCCTCTTTCAACAAcaaaacatcatcatcatcatcatcatcatcatcatcaaggcaTACCACATCTCCTAAACCTGAATGTTCCAATCCCTTACAGCTACAGTAAGAACACAATCCACTGATTCCAAAGATTCCAACAGAGAATCCAAAGGGATGAAAATGAAAAAATGGGAAGGTCAGTGTTCCGTGTGTTTCATTTAAGGCCTGGCATGTCTGCTATGCCTTGAGGAACATTTCTGAGTCACTGAAGAACCAGCTTTTACATTGTTTTTTTCTGACTGCATTGAAAACTTCTGCTGGCATGGTGTACGAGCAAcgagctctcacagtctcactgcagaatcagATGTTCATCTGTTCTGCAAACGTCAAATTTAGAAGTTGCTCATAACATCCAATTTCAAAGTTACTCCAACATCAATTTCAAAGTCGCTCCAAAAATCACATTTCAAAGTTGCTCCAAACatcacatttcaaagtgttttgTTGCTCCAGCTGCTCTGTATCGTTCCATGTCTCCAAACGTCAAACTTTGAAGTTATggtccgaatggttaaggtaatggttaaggtttgggatagggttcaaACATTCAGTTTAGGCACTCCTTCCAaatggttaggtaagggttaatgtTTGGGATAGGGTAAAACAATTATAAAAAGGCATTTCTTGACATCCTCTGGACATAGATAAATGTCCAATTTCGACGTCAATCTTGAACGACCTGACTGGTATGagttgctcacacacacacacacactttgttgttcccctctaatcagggactgatttagacctgggacatcaggtgggtgcaattcattatcaggtagaacagataaccagcaggctctggacctcgtagaGTTGAATACACCTGCTCTAGagggtcacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagggtgctGTCCCCTTGAGGAGTGTGTCATTCATGTGTCATTCAGTGAGTTGAGTGACACCCAACAACAGCCCCCTTTTTTCACAGATGACACTACACTGTTCTCCTCATCCTTCTGTTGTCTTCAGTTCTATACTACATAAATAAGCTTAAACCTCTGTCCCATCCActtctatatatatacacatctatTGATGATATAGATTTGAcatatagatgtgtatatatcAATATACACTCAACGGCCAGGTTATTAgttacacccatctagtaccgggtcggaccTCACTTTGCCTCCAGACAAAcctgaattctttggggcatggaaaggttgctcaattggtatcaagggacctaaagtgtgccaggaaaacatttccatcaccattacaccactgccaccagcctgtaccgttgacacaaGGCAGGAGGAGGCAATGGATTCATGCTGCTtctgccaaatcctgactctgcaaTCAGCATGATgtaacaggaaccgggattcgtcggaccaggcaatgtttttccactcatcagttgtccagtgttggtgatcgcgtgcccactggagccacttgttcttgtttttagctgataggagtggaacccggtgcggtcgtctgctgcaatagcccatccatgaCAATGTTCTGAGATGCTGTTGTACTGCGTCATTATTTGCTTGTTTGTGGCCCACCtcttagcttgcacgattcttgctattctccttcgacctctcatcaacgagctgttttgtccacaggactgctgctgactggatgttttttgtttgtctcaTCATTCTCATTAAATCCTAGACTCtgttgtgcgtgaaaagcccaggattccgtccgtttctgagatactggaactggCGCGCCTGGCACCAACGATCATGCcatgctcaaagtcgcttaggtcactcattttgcgcattctaatgttcaatcgaagagtaactgaatgccttgatgccgGTCTGCCGactttacagtggggcaaaaaagta

Function

NR:

description
ceramide kinase-like protein isoform X2

GO:

id name namespace
GO:0042461 photoreceptor cell development biological_process
GO:0010842 retina layer formation biological_process
GO:0005829 cytosol cellular_component
GO:0005730 nucleolus cellular_component
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110520318 True 5784 mRNA 0.47 8 61506974 61548252

Neighbor

gene id symbol gene type direction distance location
LOC118964366 NA coding downstream 236402 61270516 ~ 61270572 (-)
LOC110520314 LOC106586461 coding downstream 252336 61202903 ~ 61254638 (-)
LOC110520312 LOC106586462 coding downstream 315101 61034879 ~ 61191873 (-)
LOC110520311 LOC106586460 coding downstream 493797 60974920 ~ 61013177 (-)
LOC110520310 LOC106586459 coding downstream 549111 60952856 ~ 60957863 (-)
LOC110520317 ndf1 coding upstream 30327 61578579 ~ 61583060 (-)
LOC110520320 LOC106586468 coding upstream 115453 61663705 ~ 61728601 (-)
LOC110520322 LOC106586411 coding upstream 220251 61768503 ~ 61772972 (-)
il-1r1 il-1r1 coding upstream 341857 61890109 ~ 61916561 (-)
zmp:0000000936 LOC106586476 coding upstream 371642 61919894 ~ 61956548 (-)
G283114 NA non-coding downstream 1570 61503993 ~ 61505404 (-)
G283108 NA non-coding downstream 105568 61401186 ~ 61401406 (-)
G283105 NA non-coding downstream 108627 61398058 ~ 61398347 (-)
G283100 NA non-coding downstream 113098 61393662 ~ 61393876 (-)
G283088 NA non-coding downstream 126030 61380742 ~ 61380944 (-)
G283195 NA non-coding upstream 3896 61552148 ~ 61554728 (-)
G283197 NA non-coding upstream 13911 61562163 ~ 61562391 (-)
G283198 NA non-coding upstream 19723 61567975 ~ 61568475 (-)
G283224 NA non-coding upstream 54505 61602757 ~ 61603197 (-)
G283251 NA non-coding upstream 94846 61643098 ~ 61647279 (-)
G277749 LOC106586429 other downstream 3917791 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 4103399 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 4209212 57270782 ~ 57297762 (-)
G275250 NA other downstream 6095487 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 6387762 55068639 ~ 55122013 (-)
G284018 NA other upstream 1166323 62714575 ~ 62715177 (-)
G286522 NA other upstream 3421297 64969549 ~ 64970755 (-)
G286580 marco other upstream 3466007 65014259 ~ 65029736 (-)
G286638 NA other upstream 3506448 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 3686928 65235180 ~ 65235908 (-)

Expression


Co-expression Network