LOC110520310 (LOC106586459)


Basic Information

Item Value
gene id LOC110520310
gene name LOC106586459
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60952856 ~ 60957863 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597539.2
CTAGAGAATTGGGCAAGACATCCTCTTCATTCTTTACACAGATTTTGAGGATTGAGGTGTTTTTTGTGTTCTTTAACAGTGCTTTCAATTTGGATTGCGAAGAATCTTTTGAACTAAAAAAAAGGCTACCCAGGAAGAAGAATACAGGACCAGGAATGACATCCCTGACAGAAGCCAAGCTGACCCTGCAGAACCTGCATCTGGATCAGATGCAGAGGGCGCGCGTCAACCAACTCAAGGAGAGGCAGTGGCTGGAAAACTTGCTGAAGGGGCAGTTAGACTGGAAGAAGAAGaatgtggaggagatggaggcagAGGTGAAGAAACTGACcgaagaggaggggaagaagaAGACTGAGGTTGAGGCCTGCCAGGCAGACAAGAAACAAAAGGAGGAAGTACTTGCACCCATACAGAAGGAGCAGAGTGATATTGAAGCGACGTTCAATACTGAAAAGGAGGCTTGGACTGGGGAGATCACCACACTCAAACAGCAATTGGAGCAGAGGAGCAAAGTGTGTGGTTTTGTAAAGGACTCAACAGATACAGCGACATTATGTCCACCCAAAGAAGGAGCAGCAAAAGCTGAAACGGCCCCTGTACAAGGTCAACCTGCCTCGACAAAAGCTGAAGCGGCCCATGTACAAGGTGAACCTGCCTCTGCAAAAGCTGAAGCGGCCCCTGTTAAACCTGAAGTGGCCCCTGTTAAACCTGAAGCGGCCCTTGTTAAACCTGAAGTGGCCCCTGCTCCAAAGTAGTAAATGTCTCAAATTTCTCTCAGAATAACATTAATGGTGTGTAGTCATTCATTCATGATGCGCActcatatttatgtttttttttttgtgggtaATCTTGTGGGTAATCTTGGCAACCCCATGTAAATTACACCATTTATGTTATGTAGTCTGTACACAAGAGATTAGGCTGTGGGCATTGTCAATGTTTCAGTTTGGCACACTATGTAGCCTAAAGTAATTAGGTGCTGTTCGTTTTTAAAAACTATGGATATCTTATCagtttttaaataaatgttttttgtttttcatttacatttttataaAGCCTTTTAGTTAGGCACAGAAAACATGGAAAGAGAAACCACTGCCTTTCCCTGTTGATGGTTCGTGTGATGAAGAGGGAGGAACTCCTATCAAACCTGCACAGTTCAATACCAATATAACTTAGACCATTAAAGCTTTAATACAGCTTACCTTATCATCACCATCATTGACTGCCAGGGTAAAACATAATATTGTAACGCTGTTGGGTGTAATCTGCCAGGGTAAAATGGAGCCGGCTAGTGGACGAGTAATATGTAAACGTAGGGTGACAGTGAGCCACCAGCAAAATAACCATAGATGAGATGTTGACAATGGCTAATTAATAGGCATAAATAAATAGTATTTCTATGATTGCAGTCTTCAAAGATTGAATTGCAATGAATCAGATTCAGGCGCAGTGTTTTGTGCTTTGGAATGTTCAGTATTCCTGGGATACCATGCTGTCACCATGTAAAttatataaaaacatttataaaacaggttgtttggatcctggatgcaGACTGGTTGATAGAAGAGAGTTATAGCACAACAATCCCCGCATTCACCGGGTAATGCCTGTTAACAGTTCAATTAGATTTATTAATGCGCATCCACTATCCACTAGCCTGGCTGACGCGACTCACGGTACCACACAGCAATGAAGAGCTGTGACTCACTGGTCTGGAAAGGAGGCTGTTAATTAATGCAATATTCACTCAGAAATTGAGCAGATGGATTGATTGGATGAGACCTCTCATTGTTTGGATTTGAAAATCCAACATTTGTAATGGAAGGGGGCAGCACTCAGGGGCTTTGTGTGGCTGTGCCTGTAGGTGTTTGAGTGAGACAACATCAAAACAGCCTTTCCAGACTCTCAAGTCAGGAGGACTTCGAGTTTGGTATCAGCCAGACTACTGTCCCATAACCCAGCCAGTCAATTTATATTATAGCCTTAACATCATCTCCCCCATTAAAAAGTATCTAAACAATTTTCCCCCATGCTACTAGGTTAGCATTTAGTTTGCAACAGTTagggtttgtctaaaccttgctgtctgcttctctgacctgTGGAAGGTTTATTGCGATCTCCTCCGTGCCATGCATATGAACGTGAAGTGACTGACAGTTTCTCTGAGCCAgacaaattcatttatcaggatcattataatggatatatccaaagaaatggcaaaaGAAACAAACAAATGTAAAACCAAGGAAAGTACACATAGTtactgtcatttcagctgctttcTTTAGTTGGCTAGAGCAAAGGAGAAGTACAGTAGCTAGCCTGGAGCTACATGCCAATGATTTGTTTAGCATAGCAATCATTGCAAAAAATAATGGATAGAATGAACGACCAGCCCATTTAGCTAACAACTTAAGACCTCataattattttaaaaatgtttgcattTTATCGCACCTACAGTATAGTTTTTATGATCATAGGACATTTCCCACTAAATCCACCCACACTCCTATTCAAATAGTCATCTCTACTACTCAGCTGTCGTTGTCTTTTTACTTGCTTGAGGAAATGCAGTAGATATTTACTGAAGTGGGAATGAGATATTGGACTTTGATCCATCACTGACAACGATGTGCTTGAAGTATTTCCATCACAGTAATGATGATGCACTGGGTACTCTGATCATGATGTGTAATCAATTAATGTCGCGTTTTTTCAGTTTGCTTTACTTCTTTGTCCATAAGCTTCTGATTGAGGCTTATAGGACTTCAGAAAAATTTATACTTtttaaaactttaaaaaaaactttttgttATTCTTACTTTTTCAAGAACTGTCCGTTCAAAACGATACTGAAAAATCGTTTTGAGTTTTGGAATGGCATCATATTTCATGGCCATTCTGTAGTACTTATCATGGAGATGGTCAAAAACAAACTACTGTCTCACAGGTTGATGGAATTTCACAATGCCATTACTAACAAAATAAAATCTAAGATGGTAAAAGAGAA
>XM_021597538.2
GCTAGAGAATTGGGCAAGACATCCTCTTCATTCTTTACACAGATTTTGAGGATTGAGGTGTTTTTTGTGTTCTTTAACAGTGCTTTCAATTTGGATTGCGAAGAATCTTTTGAACTAAAAAAAAGGCTACCCAGGAAGAAGAATACAGGACCAGGAATGACAGTAAGAATCAGATTTACTgtagaggaaaggaagaggaacAAAATTATATACAAATAAGTTCATAGATTTGCTTCAGCCTTCATGCTGTAGGCTATGGGAGGACTATGGTAACTAACGAGTCATAGAAACTCACTCATACAACCACAcattatcattgactcagtgaaTAAGGTAAACCGTTTAATAGCCACTGTGCTCTCTGCCACACAAAATTAATATTGTAAAGACGTAGGtgatatatagatatacatacagtatatacacataaaAGTCCAgcagacacacatacattcacacagGGACAAATACATAGACTGAAAGAACATAAAGAACCAACACCCACACAAACTCCCAGAGGCAACCATGAGGGTTGTGTTGGTGCTAGGAGGCCTAactatcctggtctctatgggcCTGGCCCTGATCGTCTTTGGCCAGTCCCTGACAGAAGCCAAGCTGACCCTGCAGAACCTGCATCTGGATCAGATGCAGAGGGCGCGCGTCAACCAACTCAAGGAGAGGCAGTGGCTGGAAAACTTGCTGAAGGGGCAGTTAGACTGGAAGAAGAAGaatgtggaggagatggaggcagAGGTGAAGAAACTGACcgaagaggaggggaagaagaAGACTGAGGTTGAGGCCTGCCAGGCAGACAAGAAACAAAAGGAGGAAGTACTTGCACCCATACAGAAGGAGCAGAGTGATATTGAAGCGACGTTCAATACTGAAAAGGAGGCTTGGACTGGGGAGATCACCACACTCAAACAGCAATTGGAGCAGAGGAGCAAAGTGTGTGGTTTTGTAAAGGACTCAACAGATACAGCGACATTATGTCCACCCAAAGAAGGAGCAGCAAAAGCTGAAACGGCCCCTGTACAAGGTCAACCTGCCTCGACAAAAGCTGAAGCGGCCCATGTACAAGGTGAACCTGCCTCTGCAAAAGCTGAAGCGGCCCCTGTTAAACCTGAAGTGGCCCCTGTTAAACCTGAAGCGGCCCTTGTTAAACCTGAAGTGGCCCCTGCTCCAAAGTAGTAAATGTCTCAAATTTCTCTCAGAATAACATTAATGGTGTGTAGTCATTCATTCATGATGCGCActcatatttatgtttttttttttgtgggtaATCTTGTGGGTAATCTTGGCAACCCCATGTAAATTACACCATTTATGTTATGTAGTCTGTACACAAGAGATTAGGCTGTGGGCATTGTCAATGTTTCAGTTTGGCACACTATGTAGCCTAAAGTAATTAGGTGCTGTTCGTTTTTAAAAACTATGGATATCTTATCagtttttaaataaatgttttttgtttttcatttacatttttataaAGCCTTTTAGTTAGGCACAGAAAACATGGAAAGAGAAACCACTGCCTTTCCCTGTTGATGGTTCGTGTGATGAAGAGGGAGGAACTCCTATCAAACCTGCACAGTTCAATACCAATATAACTTAGACCATTAAAGCTTTAATACAGCTTACCTTATCATCACCATCATTGACTGCCAGGGTAAAACATAATATTGTAACGCTGTTGGGTGTAATCTGCCAGGGTAAAATGGAGCCGGCTAGTGGACGAGTAATATGTAAACGTAGGGTGACAGTGAGCCACCAGCAAAATAACCATAGATGAGATGTTGACAATGGCTAATTAATAGGCATAAATAAATAGTATTTCTATGATTGCAGTCTTCAAAGATTGAATTGCAATGAATCAGATTCAGGCGCAGTGTTTTGTGCTTTGGAATGTTCAGTATTCCTGGGATACCATGCTGTCACCATGTAAAttatataaaaacatttataaaacaggttgtttggatcctggatgcaGACTGGTTGATAGAAGAGAGTTATAGCACAACAATCCCCGCATTCACCGGGTAATGCCTGTTAACAGTTCAATTAGATTTATTAATGCGCATCCACTATCCACTAGCCTGGCTGACGCGACTCACGGTACCACACAGCAATGAAGAGCTGTGACTCACTGGTCTGGAAAGGAGGCTGTTAATTAATGCAATATTCACTCAGAAATTGAGCAGATGGATTGATTGGATGAGACCTCTCATTGTTTGGATTTGAAAATCCAACATTTGTAATGGAAGGGGGCAGCACTCAGGGGCTTTGTGTGGCTGTGCCTGTAGGTGTTTGAGTGAGACAACATCAAAACAGCCTTTCCAGACTCTCAAGTCAGGAGGACTTCGAGTTTGGTATCAGCCAGACTACTGTCCCATAACCCAGCCAGTCAATTTATATTATAGCCTTAACATCATCTCCCCCATTAAAAAGTATCTAAACAATTTTCCCCCATGCTACTAGGTTAGCATTTAGTTTGCAACAGTTagggtttgtctaaaccttgctgtctgcttctctgacctgTGGAAGGTTTATTGCGATCTCCTCCGTGCCATGCATATGAACGTGAAGTGACTGACAGTTTCTCTGAGCCAgacaaattcatttatcaggatcattataatggatatatccaaagaaatggcaaaaGAAACAAACAAATGTAAAACCAAGGAAAGTACACATAGTtactgtcatttcagctgctttcTTTAGTTGGCTAGAGCAAAGGAGAAGTACAGTAGCTAGCCTGGAGCTACATGCCAATGATTTGTTTAGCATAGCAATCATTGCAAAAAATAATGGATAGAATGAACGACCAGCCCATTTAGCTAACAACTTAAGACCTCataattattttaaaaatgtttgcattTTATCGCACCTACAGTATAGTTTTTATGATCATAGGACATTTCCCACTAAATCCACCCACACTCCTATTCAAATAGTCATCTCTACTACTCAGCTGTCGTTGTCTTTTTACTTGCTTGAGGAAATGCAGTAGATATTTACTGAAGTGGGAATGAGATATTGGACTTTGATCCATCACTGACAACGATGTGCTTGAAGTATTTCCATCACAGTAATGATGATGCACTGGGTACTCTGATCATGATGTGTAATCAATTAATGTCGCGTTTTTTCAGTTTGCTTTACTTCTTTGTCCATAAGCTTCTGATTGAGGCTTATAGGACTTCAGAAAAATTTATACTTtttaaaactttaaaaaaaactttttgttATTCTTACTTTTTCAAGAACTGTCCGTTCAAAACGATACTGAAAAATCGTTTTGAGTTTTGGAATGGCATCATATTTCATGGCCATTCTGTAGTACTTATCATGGAGATGGTCAAAAACAAACTACTGTCTCACAGGTTGATGGAATTTCACAATGCCATTACTAACAAAATAAAATCTAAGATGGTAAAAGAGAA

Function

NR:

description
uncharacterized protein LOC110520310 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597539.2 False 3034 mRNA 0.40 5 60952856 60957862
XM_021597538.2 True 3473 mRNA 0.40 4 60952856 60957863

Neighbor

gene id symbol gene type direction distance location
LOC110520309 LOC106586458 coding downstream 11663 60891843 ~ 60941193 (-)
LOC110520307 LOC106586456 coding downstream 64594 60709954 ~ 60888262 (-)
LOC118944682 NA coding downstream 263392 60686454 ~ 60689464 (-)
LOC110520306 LOC106586457 coding downstream 269932 60659246 ~ 60682924 (-)
snx4 snx4 coding downstream 318972 60620486 ~ 60633884 (-)
LOC110520311 LOC106586460 coding upstream 17057 60974920 ~ 61013177 (-)
LOC110520312 LOC106586462 coding upstream 77016 61034879 ~ 61191873 (-)
LOC110520314 LOC106586461 coding upstream 245040 61202903 ~ 61254638 (-)
LOC118964366 NA coding upstream 312653 61270516 ~ 61270572 (-)
LOC110520318 NA coding upstream 549111 61506974 ~ 61548252 (-)
G281872 NA non-coding downstream 336425 60616186 ~ 60616431 (-)
G281832 NA non-coding downstream 412511 60540132 ~ 60540345 (-)
G281393 NA non-coding downstream 544500 60408064 ~ 60408356 (-)
G282125 NA non-coding upstream 72523 61030386 ~ 61030761 (-)
G282179 NA non-coding upstream 151265 61109128 ~ 61110355 (-)
G282206 NA non-coding upstream 185483 61143346 ~ 61145221 (-)
G282977 NA non-coding upstream 235784 61193647 ~ 61211320 (-)
G282986 ube2e3 non-coding upstream 374858 61332721 ~ 61340510 (-)
G277749 LOC106586429 other downstream 3363673 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 3549281 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 3655094 57270782 ~ 57297762 (-)
G275250 NA other downstream 5541369 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 5833644 55068639 ~ 55122013 (-)
G284018 NA other upstream 1756712 62714575 ~ 62715177 (-)
G286522 NA other upstream 4011686 64969549 ~ 64970755 (-)
G286580 marco other upstream 4056396 65014259 ~ 65029736 (-)
G286638 NA other upstream 4096837 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 4277317 65235180 ~ 65235908 (-)

Expression


Co-expression Network