XLOC_021764 (lzic)


Basic Information

Item Value
gene id XLOC_021764
gene name lzic
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 29569893 ~ 29575691 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043181
CGTCAACTCTGCGCAGAGTTTACGCAGACCGACCATAGGCTTTCTATTGAAGATCAATAGCAAGCCACACCTTAGCAAACTGGACTTAGGAACATAGCAATTGTAATTTTATCTTTAACATTGggagttttattaattaaataagatACAGaatggcTTCTAGAGGGAAATCAGAAACAAGCAAACTGAGACAAAACATGGAGGAACAGCTGGACCGGTTAATGCAGCAGCTCCAGGATTTAGAGGAGTGCAGAGAGGATCTTGAAGAGGAGGAATATGAAGAAACCAAAAAAGAGACACTAGAACAGCTGAGCGAGTTCAATGACTCACTCAAGAAGCTGATGTCTGGGAATATGACACTAGTTGATGAATTAGGAGGAATGCAGCTGGCGATCCAAGCTGCCATCAGTCAGGCGTTCAAGACTCCTGAAGTTATTCGGCTGTTTGCTAAAAAGCAGCCAGGGCAACTGAGGACGAGACTGGCGGAGATGGACCGCGATGTGATGGTTGGAAAGCTCTCTAGAGATGTGTTCACTCAGCAGAAAGTAGAGATCCTCACAGCTCTGAGAAAACTTGGCGAGAAGctgacaacaGAGGATGAGGCGTTCCTCGCTGCCAACGCTAGTGCCACTTTGAGCCATTTTGAGAAGGTCACTGCGAGTCTGGGATCTGAGGATAAGATAATGGCCTTAGCCAGTTCTGGAGTTGGAAAGACTCAGACATAAAGTTTTACTTGGACTTTTCTTGTGAGCATGGCCTAAATGCTGCCTGTGacttttacaatatttacattttgtgtttgttttcttttagttttttgtaataTTCATACTTGGAACAGAACTGATTGTATGTGCCTTTATGTCTTCAGATGATCAGTCATTTGGTTTGTATCATGtacattttatgtttgattgtacGTTCTGATTTCGGTACggtgaaaaaaagtgtttacatttCTGCTGAAAGACATTCACAGTCATTTTAGAATAGCTCTTATTTTCCTGAATACAAAGAGGTAACATTTCCTTTATTCACATTGagtttatttgtttaaccctctggttgtaatttaatttattaacctTGTTATCCAATTGTTTGCCAAAAAGCCTTTTGGTTCTAGTATTTGATAGTAAAATAGACTGTAAGTAATCACTATgcattttaatttgctttttaacCACTgtgatatttgtaaatattttgtatgTGAATATATTTGATGATTAACATCTGA
>TCONS_00043182
aatggcTTCTAGAGGGAAATCAGAAACAAGCAAACTGAGACAAAACATGGAGGAACAGCTGGACCGGTTAATGCAGCAGCTCCAGGATTTAGAGGAGTGCAGAGAGGATCTTGAAGAGGAGGAATATGAAGAAACCAAAAAAGAGACACTAGAACAGCTGAGCGAGTTCAATGACTCACTCAAGAAGCTGATGTCTGGGAATATGACACTAGTTGATGAATTAGGAGGAATGCAGCTGGCGATCCAAGCTGCCATCAGTCAGGCGTTCAAGACTCCTGAAGTTATTCGGCTGTTTGCTAAAAAGCAGCCAGGGCAACTGAGGACGAGACTGGCGGAGATGGACCGCGATGTGATGGTTGGAAAGCTCTCTAGAGATGTGTTCACTCAGCAGAAAGTAGAGATCCTCACAGCTCTGAGAAAACTTGGCGAGAAGctgacaacaGAGGATGAGGCGTTCCTCGCTGCCAACGCTAGTGCCACTTTGAGCCATTTTGAGAAGGTCACTGCGAGTCTGGGATCTGAGGATAAGATAATGGCCTTAGCCAGTTCTGGAGTTGGAAAGACTCAGACATAAAGTTTTACTTGGACTTTTCTTGTGAGCATGGCCTAAATGCTGCCTGTGacttttacaatatttacattttgtgtttgttttcttttagttttttgtaataTTCATACTTGGAACAGAACTGATTGTATGTGCCTTTATGTCTTCAGATGATCAGTCATTTGGTTTGTATCATGtacattttatgtttgattgtacGTTCTGATTTCGGTACggtgaaaaaaagtgtttacatttCTGCTGAAAGACATTCACAGTCATTTTAGAATAGCTCTTATTTTCCTGAATACAAAGAGGTAACATTTCCTTTATTCACATTGagtttatttgtttaaccctctggttgtaatttaatttattaacctTGTTATCCAATTGTTTGCCAAAAAGCCTTTTGGTTCTAGTATTTGATAGTAAAATAGACTGTAAGTAATCACTATgcattttaatttgctttttaacCACTgtgatatttgtaaatattttgtatgTGAATATATTTGATGATTAACATCTGAGAAgttgtcagtgttgttttcttttataatttgtcttattttattGCATTACAAATTTTACAAATAGGAAAAACTGCTTTGATTATCAATCCACCTTATGTGTGCACACTTCTAAACATTATacactgcagttttttttatataagcgAATAGAATGTGAATGTAATTTTACCATAACATTGACTGGCTTTTGAATCTTTTCTGAATCATTACGCAGCATAGAGAATTATTATTAGAGATAGATAttcatatttttagtttttaagcaCCAGGGGGCGCTCAAGTCCAACAATACTGAGGTTAAATCGAGCATCAACACTATGGAGAGATGAGAGATGAAATGCCTGAGGAAAGATCAAGgtgaatcattaaaaaaaaaaccttttggattttgaaacatttctttctttccaACTTAAGAAGGAGGAGGATgatactttttgtttttgtagcaaatattacattatttaggCATAGAAACAAGCCCATATACatatttgtattgtattatatgcattcattcattttcttttcagcttagtacctttattaatcaggggtcgccacagtggaatgaaccgccaacttatccagcaaatgttttacacagcggatgcccttccagctgcaaaccatctctgggaaacatccatacacatcacacacatacactacggacaatttagcttacccaattcacctttaccacgtctttggacttgtgggggaaaccggaacacctggaggaagcccacgtgaacacagtaagaacatgcaaactccacacagaaatgccaactgactcagccagggctcgaaccagcgaccttcttgctgtgaggcaattgtgctaccccaTGCGCCACCGTGCTTTCCTGtagtgtaaaatatattattaaaatgcatttttaaatagtaaataaaaacatataattattattataata
>TCONS_00043183
ACACAGAACAACCTGTGATTGTTTAATGTCGAAGTAAATTTTTCTTAGGCGATCCAAGCTGCCATCAGTCAGGCGTTCAAGACTCCTGAAGTTATTCGGCTGTTTGCTAAAAAGCAGCCAGGGCAACTGAGGACGAGACTGGCGGAGGTGACCAACATTGTTTAATACTGACATTTTTCAAATATACGACCCCCTGCGTGCTTATGCTCATGTGCTGTTTGATGAATTCAGATGGACCGCGATGTGATGGTTGGAAAGCTCTCTAGAGATGTGTTCACTCAGCAGAAAGTAGAGATCCTCACAGCTCTGAGAAAACTTGGCGAGAAGctgacaacaGAGGATGAGGCGTTCCTCGCTGCCAACGCTAGTGCCACTTTGAGCCATTTTGAGAAGGTCACTGCGAGTCTGGGATCTGAGGATAAGATAATGGCCTTAGCCAGTTCTGGAGTTGGAAAGACTCAGACATAAAGTTTTACTTGGACTTTTCTTGTGAGCATGGCCTAAATGCTGCCTGTGacttttacaatatttacattttgtgtttgttttcttttagttttttgtaataTTCATACTTGGAACAGAACTGATTG

Function

symbol description
lzic Predicted to enable beta-catenin binding activity. Acts upstream of or within central nervous system development. Is expressed in brain; head; and notochord. Orthologous to human LZIC (leucine zipper and CTNNBIP1 domain containing).

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0007399 nervous system development biological_process
GO:0007417 central nervous system development biological_process
GO:0005575 cellular_component cellular_component
GO:0008013 beta-catenin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-342 Predicted to enable beta-catenin binding activity. Acts upstream of or within central nervous system development. Is expressed in brain; head; and notochord. Orthologous to human LZIC (leucine zipper and CTNNBIP1 domain containing).

Ensembl:

ensembl_id ENSDARG00000055899

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043181 False 1240 mRNA 0.39 7 29569893 29574744
TCONS_00043182 False 2036 mRNA 0.38 6 29570386 29575691
TCONS_00043183 True 593 lncRNA 0.43 3 29572078 29574354

Neighbor

gene id symbol gene type direction distance location
XLOC_021763 NA coding upstream 167797 29396181 ~ 29402096 (+)
XLOC_021762 tardbpl coding upstream 207048 29357790 ~ 29362845 (+)
XLOC_021761 NA coding upstream 609584 28944314 ~ 28960309 (+)
XLOC_021760 CR677513.2 coding upstream 643853 28925923 ~ 28926040 (+)
XLOC_021759 CR677513.1 coding upstream 666437 28903330 ~ 28903456 (+)
XLOC_021765 NA coding downstream 4852 29580543 ~ 29583279 (+)
XLOC_021766 BX571850.1 coding downstream 12753 29588444 ~ 29588558 (+)
XLOC_021767 NA coding downstream 265168 29840859 ~ 29846879 (+)
XLOC_021768 aurkaip1 coding downstream 307525 29883216 ~ 29888793 (+)
XLOC_021769 mxra8b coding downstream 313398 29889089 ~ 29906163 (+)
XLOC_021758 NA non-coding upstream 673813 28895775 ~ 28896080 (+)
XLOC_021774 NA non-coding downstream 826623 30402314 ~ 30433385 (+)
XLOC_021777 AL845357.1 non-coding downstream 1188596 30764287 ~ 30772886 (+)

Expression


Co-expression Network