RNA id: TCONS_00043181


Basic Information

Item Value
RNA id TCONS_00043181
length 1240
RNA type mRNA
GC content 0.39
exon number 7
gene id XLOC_021764
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 29569893 ~ 29575691 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTCAACTCTGCGCAGAGTTTACGCAGACCGACCATAGGCTTTCTATTGAAGATCAATAGCAAGCCACACCTTAGCAAACTGGACTTAGGAACATAGCAATTGTAATTTTATCTTTAACATTGggagttttattaattaaataagatACAGaatggcTTCTAGAGGGAAATCAGAAACAAGCAAACTGAGACAAAACATGGAGGAACAGCTGGACCGGTTAATGCAGCAGCTCCAGGATTTAGAGGAGTGCAGAGAGGATCTTGAAGAGGAGGAATATGAAGAAACCAAAAAAGAGACACTAGAACAGCTGAGCGAGTTCAATGACTCACTCAAGAAGCTGATGTCTGGGAATATGACACTAGTTGATGAATTAGGAGGAATGCAGCTGGCGATCCAAGCTGCCATCAGTCAGGCGTTCAAGACTCCTGAAGTTATTCGGCTGTTTGCTAAAAAGCAGCCAGGGCAACTGAGGACGAGACTGGCGGAGATGGACCGCGATGTGATGGTTGGAAAGCTCTCTAGAGATGTGTTCACTCAGCAGAAAGTAGAGATCCTCACAGCTCTGAGAAAACTTGGCGAGAAGctgacaacaGAGGATGAGGCGTTCCTCGCTGCCAACGCTAGTGCCACTTTGAGCCATTTTGAGAAGGTCACTGCGAGTCTGGGATCTGAGGATAAGATAATGGCCTTAGCCAGTTCTGGAGTTGGAAAGACTCAGACATAAAGTTTTACTTGGACTTTTCTTGTGAGCATGGCCTAAATGCTGCCTGTGacttttacaatatttacattttgtgtttgttttcttttagttttttgtaataTTCATACTTGGAACAGAACTGATTGTATGTGCCTTTATGTCTTCAGATGATCAGTCATTTGGTTTGTATCATGtacattttatgtttgattgtacGTTCTGATTTCGGTACggtgaaaaaaagtgtttacatttCTGCTGAAAGACATTCACAGTCATTTTAGAATAGCTCTTATTTTCCTGAATACAAAGAGGTAACATTTCCTTTATTCACATTGagtttatttgtttaaccctctggttgtaatttaatttattaacctTGTTATCCAATTGTTTGCCAAAAAGCCTTTTGGTTCTAGTATTTGATAGTAAAATAGACTGTAAGTAATCACTATgcattttaatttgctttttaacCACTgtgatatttgtaaatattttgtatgTGAATATATTTGATGATTAACATCTGA

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0007399 nervous system development biological_process
GO:0007417 central nervous system development biological_process
GO:0005575 cellular_component cellular_component
GO:0008013 beta-catenin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-342 Predicted to enable beta-catenin binding activity. Acts upstream of or within central nervous system development. Is expressed in brain; head; and notochord. Orthologous to human LZIC (leucine zipper and CTNNBIP1 domain containing).

Ensembl:

ensembl_id ENSDART00000078304

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044846 lncRNA upstream 167797 29396181 ~ 29402096 (+) True XLOC_021763
TCONS_00044845 lncRNA upstream 209028 29358666 ~ 29360865 (+) True XLOC_021762
TCONS_00043175 lncRNA upstream 609584 28944314 ~ 28960309 (+) False XLOC_021761
TCONS_00044843 lncRNA upstream 609584 28944448 ~ 28960309 (+) False XLOC_021761
TCONS_00044844 lncRNA upstream 609584 28953505 ~ 28960309 (+) True XLOC_021761
TCONS_00044847 lncRNA downstream 5799 29580543 ~ 29583279 (+) True XLOC_021765
TCONS_00044848 lncRNA downstream 266115 29840859 ~ 29846879 (+) True XLOC_021767
TCONS_00043195 lncRNA downstream 431462 30006206 ~ 30009399 (+) False XLOC_021772
TCONS_00043197 lncRNA downstream 431462 30006206 ~ 30010042 (+) False XLOC_021772
TCONS_00043198 lncRNA downstream 431492 30006236 ~ 30009190 (+) True XLOC_021772
TCONS_00043177 mRNA upstream 208275 29357790 ~ 29361618 (+) False XLOC_021762
TCONS_00043180 mRNA upstream 208724 29358188 ~ 29361169 (+) False XLOC_021762
TCONS_00043176 mRNA upstream 209028 29357790 ~ 29360865 (+) False XLOC_021762
TCONS_00043171 mRNA upstream 644136 28809002 ~ 28925757 (+) False XLOC_021757
TCONS_00043172 mRNA upstream 647806 28809024 ~ 28922087 (+) True XLOC_021757
TCONS_00043185 mRNA downstream 308472 29883216 ~ 29887477 (+) False XLOC_021768
TCONS_00043186 mRNA downstream 308472 29883216 ~ 29887478 (+) False XLOC_021768
TCONS_00043187 mRNA downstream 308477 29883221 ~ 29887272 (+) False XLOC_021768
TCONS_00043188 mRNA downstream 310275 29885019 ~ 29888793 (+) True XLOC_021768
TCONS_00043189 mRNA downstream 314345 29889089 ~ 29895258 (+) False XLOC_021769
TCONS_00043178 other upstream 207048 29357790 ~ 29362845 (+) False XLOC_021762
TCONS_00043179 other upstream 207360 29357952 ~ 29362533 (+) False XLOC_021762
TCONS_00043174 other upstream 643853 28925923 ~ 28926040 (+) True XLOC_021760
TCONS_00043173 other upstream 666437 28903330 ~ 28903456 (+) True XLOC_021759
TCONS_00043170 other upstream 769674 28800103 ~ 28800219 (+) True XLOC_021756
TCONS_00043184 other downstream 13700 29588444 ~ 29588558 (+) True XLOC_021766
TCONS_00043209 other downstream 1404641 30979385 ~ 30979499 (+) True XLOC_021782
TCONS_00043219 other downstream 1858529 31433273 ~ 31433348 (+) True XLOC_021790
TCONS_00043220 other downstream 1858835 31433579 ~ 31433663 (+) True XLOC_021791
TCONS_00043223 other downstream 2092685 31667429 ~ 31667543 (+) True XLOC_021793

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_11809724_11812692.mRNA True 1622 mRNA 0.37 6 CI01000001 11809427 ~ 11813444 (+)