RNA id: TCONS_00043188


Basic Information

Item Value
RNA id TCONS_00043188
length 2082
RNA type mRNA
GC content 0.33
exon number 3
gene id XLOC_021768
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 29883216 ~ 29888793 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTTCTTCCGAGAGTGGTTTCACGACTGAACCTGCTTTCCAAAGTGTCCAGCCCATTGCAGACACAGAGCCAGGTATTAACCAGTGCTGTGCAACACTGTCATTTCACCCCTTTTAGAGCACTTCACCATACAAACAGGTGCTTCACTTCTGCTGCTGACAACACACTTCCACCCAAACTATGGACTCCTCTTGAACCTGAGTTAGAGGAGGTACTTGTGCCCCGCAAACTATCAGTTTCACCCTTAGAAAGCTGGCTTTCCCTGCGCTACTCTCTACCTCCACTGCTGGAGGTTTCACCACCTCTGGACGAAGGGGAGATTGTAGGAAAATCCATGGTTCTGCCCTCAAGTTCTGTACCATTACTAGAGGATGGAGAACATGTAACACCACTGAATTGCAAGAACGTTTTGGATATCCGACGGAGGAAGATGAACAGGCACAAATACAAGAAGCTGCAAAAACGGACCAAGTTTCTGAGGAAGAGAGTGAGGGACGCCAGGAGGAAGAATAAACAGGAAAGATTTGAGAAAGATCTTGAGAGAATTCTTAGACGAGCTGGACTGAAGAAAGCCCCAGAGGGATGCACAGTGCCCAAAATCTATGTCAGAGTGGGTCGGTCTAAATGAGATGAATCTGTAACTTTAATATTTTTGACTTGTCTTTTCATAATACAATTTAGTGGACTACTTACTGTTTCAGTCCTATACAATCATTTGAATGAGCATACAGTGATTGTTACTGTAATAAAACACCTTACCACTTATGTATGTGTTGTGTATTGTTTAAAGACAGGGTATCTgaagggtttttaaaaaaaatcttaatgtcttaaatttaaaactaaattttagtccttaaaaatatcttaaattcgcaaaaatattgttttatatgtcttaaatcattttaaacgggtcttaatttttctgTGTCCATGTAACACCTTTCCAATCACTAACATTCCATCTCAATAAAATACcaaaagattatttattaatgtcaCTTCCTCACCATAACATTTGTTTTGAATGGTTTAGACAATTTAACTGGGCCATTAAAAATAATCTTAGCATTTAACCTTGTGTAAGTcttaaattttattcataatgatctttaaaatgtcttaaatttgacttgaaaccCTGTAAGAGCATACATTCATTTGAAACAATCTTTTTTAGCTGTTATTCTTCTCACCACTAGGGTGTAGCAAATCACCTCCAATCATACTGCTGTATTTgtgttaattataataataatattaacacattttatttatgagGCTTTTTTAAACTCCGAAGTGTTACAAAatatacaataacaaataaaaaatgctgaGAACTACTAGCTTACTGGGATTTTATGCAAGAAGCCAGAAGTCACACCACAATGAAGTACGACAAATAagcaaaatgttacaaattgcatGAAAGTGATAGTGATGATCACAAATGCTTTGCTAAAAAGATGTGTTTTAAGAAGCTTCTCAAAACAAACCTAAGTAACAGCATTCCTGATGATAATGGATAATGCTTCCCATAGTTCAACAAAAgctttagtttttgttttcattctctatTCAGCTAAGTCTgcatatttgctttatttcaagtttaaaaaaatgttctgttaatgtaattaaatatgattgaacactgaattctgctgttacattatcatttttgttttctcttAAAAACGTTAATACAAGGACACATTAAAGTTATCAAATGTcgcaataaaacatttattttttatttaaaatatatttttataaatattttattttaaatatatgatgaTGAACCTTTTTTTATCGCATTATGTATCATGGTTTTTACAAAAACGGGAAGCAGTAattattttcaacattgataaagTGCATCAATAATTGAATATAGAACAGCATTAAGTCAGCATATTTGATCGATAATAAGACTGGACTAATAATACTTGATGCTATTTAGCTCtgatcacaaaaaatgaatttcattttaaaattttcaCGTGTTAATGAGTGATTACATtgaaataaatgcacatttttcttGTATTctggattaaataaatgcagcctt

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005739 mitochondrion cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-070928-24 Predicted to be involved in mRNA processing. Predicted to be active in mitochondrion. Orthologous to human AURKAIP1 (aurora kinase A interacting protein 1).

Ensembl:

ensembl_id ENSDART00000167059

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044848 lncRNA upstream 38140 29840859 ~ 29846879 (+) True XLOC_021767
TCONS_00044847 lncRNA upstream 301740 29580543 ~ 29583279 (+) True XLOC_021765
TCONS_00043183 lncRNA upstream 310665 29572078 ~ 29574354 (+) True XLOC_021764
TCONS_00044846 lncRNA upstream 482923 29396181 ~ 29402096 (+) True XLOC_021763
TCONS_00044845 lncRNA upstream 524154 29358666 ~ 29360865 (+) True XLOC_021762
TCONS_00043195 lncRNA downstream 117413 30006206 ~ 30009399 (+) False XLOC_021772
TCONS_00043197 lncRNA downstream 117413 30006206 ~ 30010042 (+) False XLOC_021772
TCONS_00043198 lncRNA downstream 117443 30006236 ~ 30009190 (+) True XLOC_021772
TCONS_00044849 lncRNA downstream 513521 30402314 ~ 30433385 (+) True XLOC_021774
TCONS_00043203 lncRNA downstream 875494 30764287 ~ 30772886 (+) True XLOC_021777
TCONS_00043182 mRNA upstream 309328 29570386 ~ 29575691 (+) False XLOC_021764
TCONS_00043181 mRNA upstream 310275 29569893 ~ 29574744 (+) False XLOC_021764
TCONS_00043177 mRNA upstream 523401 29357790 ~ 29361618 (+) False XLOC_021762
TCONS_00043180 mRNA upstream 523850 29358188 ~ 29361169 (+) False XLOC_021762
TCONS_00043176 mRNA upstream 524154 29357790 ~ 29360865 (+) False XLOC_021762
TCONS_00043189 mRNA downstream 296 29889089 ~ 29895258 (+) False XLOC_021769
TCONS_00043190 mRNA downstream 336 29889129 ~ 29906163 (+) True XLOC_021769
TCONS_00043191 mRNA downstream 19555 29908348 ~ 29912263 (+) False XLOC_021770
TCONS_00043192 mRNA downstream 19555 29908348 ~ 29938201 (+) True XLOC_021770
TCONS_00043193 mRNA downstream 77673 29966466 ~ 29992458 (+) False XLOC_021771
TCONS_00043184 other upstream 296461 29588444 ~ 29588558 (+) True XLOC_021766
TCONS_00043178 other upstream 522174 29357790 ~ 29362845 (+) False XLOC_021762
TCONS_00043179 other upstream 522486 29357952 ~ 29362533 (+) False XLOC_021762
TCONS_00043174 other upstream 958979 28925923 ~ 28926040 (+) True XLOC_021760
TCONS_00043173 other upstream 981563 28903330 ~ 28903456 (+) True XLOC_021759
TCONS_00043209 other downstream 1090592 30979385 ~ 30979499 (+) True XLOC_021782
TCONS_00043219 other downstream 1544480 31433273 ~ 31433348 (+) True XLOC_021790
TCONS_00043220 other downstream 1544786 31433579 ~ 31433663 (+) True XLOC_021791
TCONS_00043223 other downstream 1778636 31667429 ~ 31667543 (+) True XLOC_021793
TCONS_00043229 other downstream 2044882 31933675 ~ 31940874 (+) True XLOC_021797

Expression Profile

//