Fish Transcriptome and Expression Database

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model fish

XLOC_021782 (BX649257.1)

Basic Information

Item	Value
gene id	XLOC_021782
gene name	BX649257.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007134.7
NCBI id	CM002907.2
chromosome length	46223584
location	30979385 ~ 30979499 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043209
gctggcagctagctctctgcaactttcacattgtcgcccactgaagcgaagcagggctgtgcccagtCAGCACCTGGATGGgacaccacatgggaaaactaggttgctgcctggg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000110139

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00043209	True	115	rRNA	0.58	1	30979385	30979499

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_021780	cables2a	coding	upstream	60078	30898013 ~ 30919307 (+)
XLOC_021779	XKR7	coding	upstream	88535	30859086 ~ 30890850 (+)
XLOC_021778	npbwr2a	coding	upstream	133526	30827959 ~ 30845859 (+)
XLOC_021777	AL845357.1	coding	upstream	206499	30764287 ~ 30772886 (+)
XLOC_021776	asxl1	coding	upstream	226832	30730121 ~ 30752553 (+)
XLOC_021783	si:ch211-197l9.2	coding	downstream	6031	30985530 ~ 30996756 (+)
XLOC_021784	selenoi	coding	downstream	20744	31000243 ~ 31022418 (+)
XLOC_021785	NA	coding	downstream	99065	31078564 ~ 31085951 (+)
XLOC_021786	tbx18	coding	downstream	128186	31107685 ~ 31118371 (+)
XLOC_021787	irak1bp1	coding	downstream	265896	31245395 ~ 31248952 (+)
XLOC_021774	NA	non-coding	upstream	546000	30402314 ~ 30433385 (+)
XLOC_021767	NA	non-coding	upstream	1132506	29840859 ~ 29846879 (+)
XLOC_021766	BX571850.1	non-coding	upstream	1390827	29588444 ~ 29588558 (+)
XLOC_021765	NA	non-coding	upstream	1396106	29580543 ~ 29583279 (+)
XLOC_021790	CR759830.1	non-coding	downstream	453774	31433273 ~ 31433348 (+)
XLOC_021791	CR759830.2	non-coding	downstream	454080	31433579 ~ 31433663 (+)
XLOC_021793	BX927365.3	non-coding	downstream	687930	31667429 ~ 31667543 (+)
XLOC_021795	NA	non-coding	downstream	884240	31863739 ~ 31885913 (+)

Expression

Co-expression Network