RNA id: TCONS_00044849


Basic Information

Item Value
RNA id TCONS_00044849
length 856
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id XLOC_021774
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 30402314 ~ 30433385 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGGAAAAGAGGAAGCCAAAACCAAACCAAATCTGCCGCCCCTCCGCGATTACCCATCAGACACTGGAACGCTAGGGCCagagggaaagagagaaagaCGGGACGATGTGGAATATGACCATGGACAAGATGAAGAGAACCTCTCCataatgaaaaatacacacttgccTTGGTATTTTGCAGAAACTAGACGCAATATCTCTACTCTTGTTGCCAAAGAGTTGCAGTGACTACAGTTGTACTTTTGCTAATTAAAAGAAAGATAGCTTACTTAAACGCTCAATTAAAAGTAGTTACTACATGCagttaagaaaataaaataaccagtcTTTGGTGCATGGTGCTAATTTACAGCAGCGCTCATGAGTAATGTTTGTTTTACAAGCCAGAGCAATAGCTTGGGGCGAAACTCCTTCATTGACCTTGAGGCCCATTTGAGATTCTTCTTCTTTATCGTTTTCCCATTAAAAGTCAACATGCCGACCTCAGAGCTGGGGGGATGAGCCGAGAGGCCCGGTCCAGTAAATAAAAGGCAAACGTCGGCATCCCCCACCCACTCCCCGAACAGATGTCGAGGATTATTCCAACCCCCCGATCAGCCATAAAGGTGCAATAACCTTacggcaaaaaaaacaaaaaaacaaacaaaaacaggcGAAGAGCCATTAAACAGCTGCGAGAGACAAAGTTTGTGCGCTTTTATAATGAGCGGCTAGTTCTCTGTTGAGCTGATTTGGTGCAGTCAAGATGGTGAAATAAAAACTGGCCAGCAGCTGTCAATCAGCTACTCACCTCATGCTCAGTCCTACAAGTGCTCTTTTAAACTTGACTTAATGATGTAACAATGATGTAAGTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043197 lncRNA upstream 392272 30006206 ~ 30010042 (+) False XLOC_021772
TCONS_00043195 lncRNA upstream 392915 30006206 ~ 30009399 (+) False XLOC_021772
TCONS_00043198 lncRNA upstream 393124 30006236 ~ 30009190 (+) True XLOC_021772
TCONS_00044848 lncRNA upstream 555435 29840859 ~ 29846879 (+) True XLOC_021767
TCONS_00044847 lncRNA upstream 819035 29580543 ~ 29583279 (+) True XLOC_021765
TCONS_00043203 lncRNA downstream 330902 30764287 ~ 30772886 (+) True XLOC_021777
TCONS_00044850 lncRNA downstream 645179 31078564 ~ 31085951 (+) True XLOC_021785
TCONS_00043214 lncRNA downstream 812046 31245431 ~ 31248945 (+) False XLOC_021787
TCONS_00043215 lncRNA downstream 812407 31245792 ~ 31248790 (+) True XLOC_021787
TCONS_00044851 lncRNA downstream 1430354 31863739 ~ 31885913 (+) True XLOC_021795
TCONS_00043199 mRNA upstream 346595 30048849 ~ 30055719 (+) True XLOC_021773
TCONS_00043196 mRNA upstream 392541 30006206 ~ 30009773 (+) False XLOC_021772
TCONS_00043193 mRNA upstream 409856 29966466 ~ 29992458 (+) False XLOC_021771
TCONS_00043194 mRNA upstream 409856 29973937 ~ 29992458 (+) True XLOC_021771
TCONS_00043192 mRNA upstream 464113 29908348 ~ 29938201 (+) True XLOC_021770
TCONS_00043200 mRNA downstream 274452 30707837 ~ 30724909 (+) True XLOC_021775
TCONS_00043201 mRNA downstream 296736 30730121 ~ 30752553 (+) False XLOC_021776
TCONS_00043202 mRNA downstream 303510 30736895 ~ 30751969 (+) True XLOC_021776
TCONS_00043204 mRNA downstream 394574 30827959 ~ 30845859 (+) False XLOC_021778
TCONS_00043205 mRNA downstream 402204 30835589 ~ 30845859 (+) True XLOC_021778
TCONS_00043184 other upstream 813756 29588444 ~ 29588558 (+) True XLOC_021766
TCONS_00043178 other upstream 1039469 29357790 ~ 29362845 (+) False XLOC_021762
TCONS_00043179 other upstream 1039781 29357952 ~ 29362533 (+) False XLOC_021762
TCONS_00043174 other upstream 1476274 28925923 ~ 28926040 (+) True XLOC_021760
TCONS_00043173 other upstream 1498858 28903330 ~ 28903456 (+) True XLOC_021759
TCONS_00043209 other downstream 546000 30979385 ~ 30979499 (+) True XLOC_021782
TCONS_00043219 other downstream 999888 31433273 ~ 31433348 (+) True XLOC_021790
TCONS_00043220 other downstream 1000194 31433579 ~ 31433663 (+) True XLOC_021791
TCONS_00043223 other downstream 1234044 31667429 ~ 31667543 (+) True XLOC_021793
TCONS_00043229 other downstream 1500290 31933675 ~ 31940874 (+) True XLOC_021797