RNA id: TCONS_00043201


Basic Information

Item Value
RNA id TCONS_00043201
length 5881
RNA type mRNA
GC content 0.50
exon number 12
gene id XLOC_021776
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 30730121 ~ 30752553 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGAGGGGGATGGGGACAATTGTTTTTTGTGTTGCATTCCTGCAGTGTGTTTGACCTTTGACCTCGTTGTTGCGTTCTCCTCGTCTTGCATTCCAAACTGAGGATTTCCTGCAGTATGCCAAAAGCTGCTGGGGCTCGCCTTTTCTTCGCCCTGTGTGTGTTTACCACTATTTAACCAGCGGAGTCGTTCGTTAGCCTAAAAATAACACACTCAGGAACGCCGCTGCTACAACGACCGATCGCTTTCTTAGACAAGCCGTTATACGGAAGAGCGTGCGGGGTTTAAACAGAGCGAGTACTATAGGCGAAACGCAATCAAACCCCCGTTTGGTGTTGCAGCTATTAGCCTAGCACGCTAGCGGGGCTTGCCGTATATATCACGCACACGTTTCATATCCGCTGCAGAAATCCGCACCCGCGCGACAACACTGAGGAAATGAAGGACAAACAGAAGAGAAAGAAGGAGCGCACGTGGGCTGAGGCAGCTCGTATGGTTCTGGAGAACTTTTCTGATGCCCCAATGACGCCCAAACAGATTCTACATGTCATCCAAACAAAGGGGTTGAAAGAAATGAGAAGCGGCACAGCACCACTGGCCTGCCTTGTCACCATGCTTCACTCTCAGGTCAGAGGTGACCGAGTGAAAAACAGTATTTTCTTTAAGCTGCCTGGAAGGATGAGTCTGTTTACCCTAAAGAAAAATGCACTTCAGTGGACAAAGAGCCCATCAGCGAATGAGTCTGGAGATGGGACACCAACAGCATCCACCACATCAACAGTTgaaggagcagagcaggaaagcTGCGACTCCACAGAGACGGCTGCTGCTAGTGGTGAAAATGATGCCTCTGTGGATGAGACTTCCTCCAGTGCCTCTTGCTCTACAGAACCACAGACAAGACTCAGTCGCTCTTCACAGTCAGGGAGACAGAGGAAGAAGGCTGTGATGATGCCCCGTGTAGTTCTCACTCCTCTCAAGGTCAACGGTGAACACGTCCCATCAGGTCCCATGAAAAGGAGTCGAGGAGGAGTGGAGGTGGATTTTGAGACTCCAGGATCCATCCTGGTCAACACCAACATTCGTGCTCTCATCAACACACGGACCTTTGCTGCTTTTCCTTCTCACTCCCAGCAGCAACTACTCCAGCTTTTACCAGAGGTGGACAGACAGGTCGGCCCCGATGGCCTTGCTCGTCTAAGCAGTTCGGCCCTCAATAATGAATTCTTCACTCATGCCTCCCAGAGCTGGAAAGAACGTCTAGCTGAGGGTGAGTTTACACATGAGATGCAGGTTCGCTTCAGGCAGGAGATGGAAAAGGAGAAGAAAGTAGAAGCATGGAAGGAGAAATTCTTCGAGGAGTACCATGGCCAAAGGTCTGGCTTAACAAGAGAGGAGGCATTGAAGCTCACAATGAGCGAAGCTGGAGATGTTGCTAGTCCAGTGCTAGACTCCGATTCTGCTACAGTGGCTACACCCAAGAGGCGAAGTGTTGGAAGAAGACGGAGAGAAGGCCGTATCAGACGACGTTCACGGGCTGACCTCAGGCGCAGGGCAAGGCGCACACTTTGCAAAACTACAACTGCAACTGTGGCTACAGAAGAAACAACAGAGAGCACTGCAACTCCAGAAGAGGTACCATCAGTTGCATCACCAGTCCCAGAAACCACAGCAGTTCAAGGAGAGGTGGTCCTCCAAACAGACCCTGAACTTGAAGCACCAGAAGAAAACCTCTCTACAGAGGCAGTACCTTCTCCAGTTCCTGTACCCACACCTCCTCCAGCATCGACAAGCTCAACCTGCGATGAGCCAGAAACCTCTACACGCCTGTTGCCAGAAGTACCCGAACCAGCTGTTGCATCCACCTCATCTCCTTCCTCATCCTCCTCTTCAACATCGTCATCATCTTCACCATCTTCCTCTCCATCCTCTGCCTCAGACAGACAGACTTTTGCTGCAAGCTCAGactcctcttcttcctcttcctcctccactGCTGCTGTTGCCACTGATCCGCTGGATGATGGGGCTTCAGTCATTACCACTGGCACAGCAGGCACTGGAGCAAGCAGCAGAGAAAGCAGCCCTGCAGCCAGTCCCGCTACATCAAGCCCAGCAATTCAGCTCAAGGAACAGAAGAGAAGACCAGACGAGTCCCAGGCCTTCACCAGCTTTCCCGAGAAAAGGGCGCGGCTGGATGAGCGTCAGTCCTTTCGTAACACAGTTGACTGTGTGCACTCAGAAAAGCCACAGCCTACAACAGAGGAGCCCAAGGTCCCGCCAATCCGGATACAGCTCTCCCGGATCAAACCGCCCTGGGTCAAGGGGCCGCCAACGTACCAAATCTGTCCCCGCATCGTCCCCCCCAACGAAGGGTCGCGGCGCTCTGGGACGGGGGCGCGCACCTTGGCGGACATCAAAGCCCGTGCACAGCAAGCCCGTGCCCAGCGGGAAGCCGCTGCTGCTGTTGCAGCCTCTGGGGATGGGGGAGGGCCTGGGGGGAGCGGCCCGGGGGGTGGTACTGGGATACCGGATCGCTCCAGCGGGAGGCGTACAAGAGAGCACCCAGGTCCCGTTGaacctggaggaggaggagggagaCGAGGAGGAAGAGTTGATTTGGAGGAGCAGGAATCGCCTGCGAGCTCTCATTCGTCGGGAGCACAACTACAGCTGTCTAGTGTAGATTCGGCAGACAGGCCTCAAACTTCCACCCCACTCACTGAACCATCTCCCTCTTCTGTGTCCTCAAACCCATCTCTACCATCATCAGAATCTCCAAAAATACTTGCGCTATCACCACCTGCAACCGACAGCCCTGCTTCCCAGGATCAGGTGGAGGAGATTTGTGGAGTGGAAGAGGTGACTGCCTGCCCAAGTGATAAAACCTCAGAGCAGACCTTAGACACCCCAGTGCCTACCCCAAGTGAATCAGAGTCTTTTTGCAGTCACCAAGATGGGAGAGGCGAGGAAGCAGAGTCGAGTGATAGTAGAACAAATACGCCTGTTTGCACCTCATCATCAAATGATGCTATTTCTTTAGTGCCCACCTCTATACCTGACTCGCTACCAAGATTTGGTGCCCAGGGTGTGGATGTCATCAGGACATTGGCAGCTTCCTCTCAGCCTTGGGAAGGTGAAAAGAAAGCGGTTGAGCTTCACCCAGGGACAACTGGAGTTATCCAGCATGGCTCAGACTTGAAATTACCCAAAGAGACTCTTGTTACAGCCAGAAATGGATGGGTAGAAAATAGAGAAGAGCATTCCATGAGAGAGGGTATGCTAGAAGAACATAGGAATGGAGGGAGTGATGCTAATGGTAAATATGAATCAGGCTCTTTACCTTGCCTACCACGATGTGCTGGTGAGGAAGACACTGGAGCACACAGTGATTCAACGGAGACAGCATCTGACTTTGAAAATGAATCACAAGAGGATGAAATGGTGGATTGGCATGGGACCCAGATGGATGGTAGTGGCATGCAAACTCAAAATACAAAATCACTGAATCGACCTGTTATTCAGACCTCAAGTCGACTCACTTCATCGATTGTTAATCCTCCTCAACACCAGCAACCGGTTATACAGGCCCATATATCTAATCAAAACCATACCCAAACTGTTATTCAGGCTTGCTTTCCTAATGGTGTGCCAAACCAACCAGTCATTCATCCTCACAAGCAGCATGCAATTAATACCCATGCTATAAACCACTCTCAGGACCAGATTGCCTCTGCACCTTCACAAGCCCAAGTGCAAGCTTATCTGACCCAGACTGAGATGGACCAAAGCAGAAATCTACGACTGAATGATAATGGCAATGGTGTGAAGCTGTATTTGTCAGAGGATGACACCAAACCTCTTGGCAGggaagatttagttttaaagaatTCTGCTGGTCCTCCAGTTGGCAGAAGAGTCCAAGTTTCATCTCGACCAGTTTCCACTGTAGAGGCCAACAATCCTCTTGTCACACAGCTCCTCCAAGGCAGTCTACCTTTAGAGAAGGTCTTACCCCAACCCCACTCAGCCAGCAAGTTAGAAATTAATCGACTTCCAGGTGCCAATTCAAGCAACTCGCTCAACCCAGCCAATCATCAAACACAGAGAAATCTGGCACCACGTTTTAGAGGCCCACCTGAGTCGGGAGGGCCTACGGACACTGTTAGTTCTGACTTCCAACACAAAACCCCACCTGCTCGAGTATCTCCTGGACCTGGTCGGAACTTTGGTTCTTCCCCGCCAGGTTCTGCTCCATCAAGAATGGCATGCCTGTTTGAGGAAGCCAGCCCCAGGTCTGCAAACTCTCAGTTCAGTTCTCAGCAACCAGGAGGCGTTGTGCCTCCAGGAGCAGTACCTGTCATAACATCCCTTCCCTTAAACTCCACCACTAGAACCTCAATGGATATGAACTCTCAGAATGCTCCAGTTTATGAATCAGCTGTTATTAAAGAGCACCCTGGACCTCTTTCTCAACGGAGTGAAACTCCTGAGAGGCCAAGTAGCTTTCAGCAGCAtcctaataatgtctcccagtccGTGTGCAGAAACACACCAGATGCTCCTTCACCTCCACATGGAGACCTTTGTCCATCAGAGGTTGTACCAACTGTTAAGATTAACTGGCGCCCAAACAAACCTCAGCAACCGATCTCCCCTGTAGCTACAGTAAAAAACGAAGTCTCCTTGCGCCCTTCGTGCCAACAAGCTCTGACCAAAAACTCACCTGCTCCTATCAGTGGCAATACGTCTGTTGTAATAACCAAAAAGGAGCCTCTGGATGGTTTTCATGGAGGTGGTGGAGCTATGGAAGGACTGCTAAATATGGAAATGTCTCTTGTCAGAATGGCCAAGAAGGAACAAGTCAAAAATCCATATACCCGCCAAGCAGACACCTCCGCTTCTCCTGTTTCTTCCTCTCCTTCCTCATCAGCCTCCAGTCTCCCTTTCCAGCTATATGGTAAGCTACCAAAACTTCAGCAGAGTGGGGGCAACGGAGGGTCCTCATCCAGCTTCAGTTACACAGCTAATGTGTCTGTGGTGGATGGTAGTGGCTTCACTCGCACCTTAGCCGATAGTGTGCTCCAACTAAGGCCACGTGTGAGCGTCGGCAGCGGTGGAGGTCAGAGTGCCACGCTTGGCATCCAGGCATTTACAGACAGTGCTGCCGAAGAAGTGGCTCTCAAGTGTTCCTGCCGACTCAAGGCTATGATCATGTGCCAGGGCTGTGGCGCTTTCTGCCATGATGATTGCATCGGCCCTTCGAAACTGTGTGTGTCATGTCTGGTTGTCAGATAGTTTGTTGCAGCTCCTTTAAAACTGAGCCGACTAATCAGAGCAAATACTTTGACCTCTCCAGACAATTCTAGCCCTTTGCCAGTGGTGGGACACTACCTGAAGTCTTGGACTCTTCTTGAGCAAGACAGTGACAGTACACTGCAGTGTTAAAACTGGactgatttttctttttgttgctGATGGGTCAGGCAATACAGTAGGGCTGGAAGATTACTTGTAAGATAAAAAATCAGTCTGtatttttgttgcatattttttctatttctgttatgatggtgttattattattattattattaatattattatgattacaataataatgatattgttgttattattattggtattattatgtGAATTTACATGGCACAGTTGATTGAAAATTGTGCCTTTTCTTTCCCCCAACAAAACATTTACCTCATCTACTTGACACCAGTCATCAGTTCAGTGTGATAATGGTGGCgttcctgtttgtttttcttctctTGCTGCACCTCTGTAAAGAGGGCTTTAGGAGTATTTTGTGTGTAATGTCTtgcaaagaaatatttttttaatcattaaacagaaaatacattttt

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0035517 PR-DUB complex cellular_component
GO:0042975 peroxisome proliferator activated receptor binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091116-9 Predicted to enable chromatin binding activity and peroxisome proliferator activated receptor binding activity. Predicted to be involved in animal organ morphogenesis and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated and transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of PR-DUB complex. Used to study myeloproliferative neoplasm. Human ortholog(s) of this gene implicated in SM-AHNMD; acute myeloid leukemia; chronic myelomonocytic leukemia; myelodysplastic syndrome; and myelofibrosis. Orthologous to human ASXL1 (ASXL transcriptional regulator 1).

Ensembl:

ensembl_id ENSDART00000134141

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044849 lncRNA upstream 296736 30402314 ~ 30433385 (+) True XLOC_021774
TCONS_00043197 lncRNA upstream 720079 30006206 ~ 30010042 (+) False XLOC_021772
TCONS_00043195 lncRNA upstream 720722 30006206 ~ 30009399 (+) False XLOC_021772
TCONS_00043198 lncRNA upstream 720931 30006236 ~ 30009190 (+) True XLOC_021772
TCONS_00044848 lncRNA upstream 883242 29840859 ~ 29846879 (+) True XLOC_021767
TCONS_00043203 lncRNA downstream 11734 30764287 ~ 30772886 (+) True XLOC_021777
TCONS_00044850 lncRNA downstream 326011 31078564 ~ 31085951 (+) True XLOC_021785
TCONS_00043214 lncRNA downstream 492878 31245431 ~ 31248945 (+) False XLOC_021787
TCONS_00043215 lncRNA downstream 493239 31245792 ~ 31248790 (+) True XLOC_021787
TCONS_00044851 lncRNA downstream 1111186 31863739 ~ 31885913 (+) True XLOC_021795
TCONS_00043200 mRNA upstream 5212 30707837 ~ 30724909 (+) True XLOC_021775
TCONS_00043199 mRNA upstream 674402 30048849 ~ 30055719 (+) True XLOC_021773
TCONS_00043196 mRNA upstream 720348 30006206 ~ 30009773 (+) False XLOC_021772
TCONS_00043193 mRNA upstream 737663 29966466 ~ 29992458 (+) False XLOC_021771
TCONS_00043194 mRNA upstream 737663 29973937 ~ 29992458 (+) True XLOC_021771
TCONS_00043204 mRNA downstream 75406 30827959 ~ 30845859 (+) False XLOC_021778
TCONS_00043205 mRNA downstream 83036 30835589 ~ 30845859 (+) True XLOC_021778
TCONS_00043206 mRNA downstream 106533 30859086 ~ 30890850 (+) True XLOC_021779
TCONS_00043207 mRNA downstream 145460 30898013 ~ 30919307 (+) True XLOC_021780
TCONS_00043208 mRNA downstream 215133 30967686 ~ 30981438 (+) True XLOC_021781
TCONS_00043184 other upstream 1141563 29588444 ~ 29588558 (+) True XLOC_021766
TCONS_00043178 other upstream 1367276 29357790 ~ 29362845 (+) False XLOC_021762
TCONS_00043179 other upstream 1367588 29357952 ~ 29362533 (+) False XLOC_021762
TCONS_00043174 other upstream 1804081 28925923 ~ 28926040 (+) True XLOC_021760
TCONS_00043173 other upstream 1826665 28903330 ~ 28903456 (+) True XLOC_021759
TCONS_00043209 other downstream 226832 30979385 ~ 30979499 (+) True XLOC_021782
TCONS_00043219 other downstream 680720 31433273 ~ 31433348 (+) True XLOC_021790
TCONS_00043220 other downstream 681026 31433579 ~ 31433663 (+) True XLOC_021791
TCONS_00043223 other downstream 914876 31667429 ~ 31667543 (+) True XLOC_021793
TCONS_00043229 other downstream 1181122 31933675 ~ 31940874 (+) True XLOC_021797

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00008050 True 4875 mRNA 0.58 13 CM030123.1 40724357 ~ 40745265 (+)