Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00043208 |
| length | 1569 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 4 |
| gene id | XLOC_021781 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 30967686 ~ 30981438 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0010506 | regulation of autophagy | biological_process |
| GO:0005615 | extracellular space | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-091204-369 | Predicted to act upstream of or within regulation of autophagy. Predicted to be located in extracellular space. |
| ensembl_id | ENSDART00000144485 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00043203 | lncRNA | upstream | 194800 | 30764287 ~ 30772886 (+) | True | XLOC_021777 |
| TCONS_00044849 | lncRNA | upstream | 534301 | 30402314 ~ 30433385 (+) | True | XLOC_021774 |
| TCONS_00043197 | lncRNA | upstream | 957644 | 30006206 ~ 30010042 (+) | False | XLOC_021772 |
| TCONS_00043195 | lncRNA | upstream | 958287 | 30006206 ~ 30009399 (+) | False | XLOC_021772 |
| TCONS_00044850 | lncRNA | downstream | 97126 | 31078564 ~ 31085951 (+) | True | XLOC_021785 |
| TCONS_00043214 | lncRNA | downstream | 263993 | 31245431 ~ 31248945 (+) | False | XLOC_021787 |
| TCONS_00043215 | lncRNA | downstream | 264354 | 31245792 ~ 31248790 (+) | True | XLOC_021787 |
| TCONS_00044851 | lncRNA | downstream | 882301 | 31863739 ~ 31885913 (+) | True | XLOC_021795 |
| TCONS_00043238 | lncRNA | downstream | 1047187 | 32028625 ~ 32038219 (+) | False | XLOC_021802 |
| TCONS_00043207 | mRNA | upstream | 48379 | 30898013 ~ 30919307 (+) | True | XLOC_021780 |
| TCONS_00043206 | mRNA | upstream | 76836 | 30859086 ~ 30890850 (+) | True | XLOC_021779 |
| TCONS_00043204 | mRNA | upstream | 121827 | 30827959 ~ 30845859 (+) | False | XLOC_021778 |
| TCONS_00043205 | mRNA | upstream | 121827 | 30835589 ~ 30845859 (+) | True | XLOC_021778 |
| TCONS_00043201 | mRNA | upstream | 215133 | 30730121 ~ 30752553 (+) | False | XLOC_021776 |
| TCONS_00043210 | mRNA | downstream | 4092 | 30985530 ~ 30996756 (+) | True | XLOC_021783 |
| TCONS_00043211 | mRNA | downstream | 18805 | 31000243 ~ 31022418 (+) | True | XLOC_021784 |
| TCONS_00043212 | mRNA | downstream | 126247 | 31107685 ~ 31118371 (+) | True | XLOC_021786 |
| TCONS_00043213 | mRNA | downstream | 263957 | 31245395 ~ 31248952 (+) | False | XLOC_021787 |
| TCONS_00043216 | mRNA | downstream | 424059 | 31405497 ~ 31423729 (+) | True | XLOC_021788 |
| TCONS_00043184 | other | upstream | 1379128 | 29588444 ~ 29588558 (+) | True | XLOC_021766 |
| TCONS_00043178 | other | upstream | 1604841 | 29357790 ~ 29362845 (+) | False | XLOC_021762 |
| TCONS_00043179 | other | upstream | 1605153 | 29357952 ~ 29362533 (+) | False | XLOC_021762 |
| TCONS_00043174 | other | upstream | 2041646 | 28925923 ~ 28926040 (+) | True | XLOC_021760 |
| TCONS_00043173 | other | upstream | 2064230 | 28903330 ~ 28903456 (+) | True | XLOC_021759 |
| TCONS_00043219 | other | downstream | 451835 | 31433273 ~ 31433348 (+) | True | XLOC_021790 |
| TCONS_00043220 | other | downstream | 452141 | 31433579 ~ 31433663 (+) | True | XLOC_021791 |
| TCONS_00043223 | other | downstream | 685991 | 31667429 ~ 31667543 (+) | True | XLOC_021793 |
| TCONS_00043229 | other | downstream | 952237 | 31933675 ~ 31940874 (+) | True | XLOC_021797 |
| TCONS_00043240 | other | downstream | 1051327 | 32032765 ~ 32038219 (+) | False | XLOC_021802 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000001_12633655_12648702.mRNA | True | 4888 | mRNA | 0.48 | 11 | CI01000001 | 12633198 ~ 12649116 (+) |
