RNA id: TCONS_00043210


Basic Information

Item Value
RNA id TCONS_00043210
length 2025
RNA type mRNA
GC content 0.49
exon number 4
gene id XLOC_021783
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 30985530 ~ 30996756 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGGAGGGTCCATCTGTGAACACCGGAGTCAAGTGTCCATCAGACCTGAATGCAGCTTTGCAGAAGGCACATGTTGAGAAGCTCCAGCAGCTGTTAGCAGAGTCCTACACTGCAGTGATGGACCTGACCAGACAGCTGAAGGTCCGAGAGAGCAGATGGAGCTCTGAGCGGCGGGAGCTGCTAGAGCACCTCAACCACAAGAAACTGGAGCAGGACGTCTCAAAGACAGCTCAGCACAATGGAGAAGTGCAGACTCCTAGACACAAGATGATGTCAAAAGATGGAAATATGCAGAGGATGGTTCTCAAAACTGCCATGACAAAACCCAACAAGAACTGGAAGTACCTCAGTCATGAAGCTGCCCTTCTTGACCGAGAGGACGCCTGCAAGACTTGGGACTGTCCTATCATGCCTCCCAGTTTCCCAGGACTGAACCTAAACCACGAACTGACTCCGAGAAGCCACACAGCTCCAGAGAGGACCAGCATCCGTATCTATTACAGCCCACCATCAGCAAAGAGAATCCAAATGAGCTCTCTGATACCCGGAGAAGAGGAAGAGCAGGAGGAGAGCCAGCAACCACATTTCACTGCCGCTTCCTCTGGCCTTGAAAAACAAGATTGGGTATCTACGTATGAAAACTGGCTGCGTAGCCTGTCGTTTGACTGCCAAAGTTTGATGGAGAGAGATTCTGAGTCTTCTTCTGGTCTGCGGACCTCCAGTATTGGGTCTCCGTCGCGGTTAGCCTTCAATAGCATGGACGTCTCGGCCAACCTGAGTGATGACATGAAGGAAATTACTGCCAGCGTTCTCCAACCCAGCTCTTTAGAGAGGAAAAGAGCCAAGGATTTTGGGAGCAAAGTGGTGAGTGTTGCGAGTACAGGAACTCAAACTCAATCCCGACCGCAGGTGACCACAATTGGGCTACAGACCGACGGACCTCGAAATCTTTACGCAGCAAAGCACTGGTCGCCCCGTGTCACTTCGTTTGTTTCCACAAGAACCCAACAAACGTCAGCACCATTGGAAAGAGTTTCAGAACGGTTTCAACCTCATAACACCTCGCCGAAAATACAACGCAGACACTCTGCTTCATCTCTGAAGTCTTCGTCGTCTACTTCGGTCTCGTCGTCTTCCTCTTTCACCACATCATCTTTATCCTCCTCATCTCTGAGTGCTTCTTCCAGGCTGGATTATGGAACGAAGGAGCGTGGATTGTGGGCTTCGCCATCCAACAGGCCCAACTCAGTGTCAATGCAGACCAGTGATAAACCTGGTGGCCGAAAAAACGTGGGAGTGCACAAGTACGGCCTGGTTCACGAGTTCCTGCGTAATGTATGCGGTCGAGGAGAGAAGACCAACATAGAGATGGAGAAAGCGccagtggctcgaagggatcatgTTAGTCTGGCGGCGGGTTCAAAGAAATCTGAACACCCCCCGTCTCGAATTCCAGCGGTGACGGTGGTCCGAAATGATAGCATCACCAAAATTGTGAACCGCAGGTTTATGAAACAAAACCAAAAGGAAGAGGCTGTGTGTCAGAGCCAGACCCAAACTCAGCGGCAAACTGACAAGGGTTCAATCAGCAGGAACAAGGGCTTGGAGGAGCCTGTGACTGCAGCTCACGCTCTCTGACATCCTGCTTCGCTCGACCCTCACAAAAAAACTCTCGACCCAGTCAAAACAAGCCTCGTTCACACGAACACCCTCCATCTCGAGGTAAAAGCGATCCACTTGTCTAATAGGAGTCATCAGGAAGCTTAAGGGATCAGCAGGCCAGGATGGATCATTCACGTATTTCTACATATCACCCCTTTTGAGATCCCGATATATTTTGGCTTACTTGATTACTCATTCATCTTTAATTTATCATGTTAAAATCCATTCCACAGAATTTCCATTAAAATCAGCATTTAAAAACAAGCTGCCTCCTTGTACTGGGGTTacaggaacactccacttttttataaacaggctcattttacaactctcctAGAATTAGATATTTCAGCTTTAGCATTT

Function

GO:

id name namespace
GO:0010506 regulation of autophagy biological_process
GO:0005615 extracellular space cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-369 Predicted to act upstream of or within regulation of autophagy. Predicted to be located in extracellular space.

Ensembl:

ensembl_id ENSDART00000142953

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043203 lncRNA upstream 212644 30764287 ~ 30772886 (+) True XLOC_021777
TCONS_00044849 lncRNA upstream 552145 30402314 ~ 30433385 (+) True XLOC_021774
TCONS_00043197 lncRNA upstream 975488 30006206 ~ 30010042 (+) False XLOC_021772
TCONS_00043195 lncRNA upstream 976131 30006206 ~ 30009399 (+) False XLOC_021772
TCONS_00044850 lncRNA downstream 81808 31078564 ~ 31085951 (+) True XLOC_021785
TCONS_00043214 lncRNA downstream 248675 31245431 ~ 31248945 (+) False XLOC_021787
TCONS_00043215 lncRNA downstream 249036 31245792 ~ 31248790 (+) True XLOC_021787
TCONS_00044851 lncRNA downstream 866983 31863739 ~ 31885913 (+) True XLOC_021795
TCONS_00043238 lncRNA downstream 1031869 32028625 ~ 32038219 (+) False XLOC_021802
TCONS_00043208 mRNA upstream 4092 30967686 ~ 30981438 (+) True XLOC_021781
TCONS_00043207 mRNA upstream 66223 30898013 ~ 30919307 (+) True XLOC_021780
TCONS_00043206 mRNA upstream 94680 30859086 ~ 30890850 (+) True XLOC_021779
TCONS_00043204 mRNA upstream 139671 30827959 ~ 30845859 (+) False XLOC_021778
TCONS_00043205 mRNA upstream 139671 30835589 ~ 30845859 (+) True XLOC_021778
TCONS_00043211 mRNA downstream 3487 31000243 ~ 31022418 (+) True XLOC_021784
TCONS_00043212 mRNA downstream 110929 31107685 ~ 31118371 (+) True XLOC_021786
TCONS_00043213 mRNA downstream 248639 31245395 ~ 31248952 (+) False XLOC_021787
TCONS_00043216 mRNA downstream 408741 31405497 ~ 31423729 (+) True XLOC_021788
TCONS_00043217 mRNA downstream 435200 31431956 ~ 31435922 (+) False XLOC_021789
TCONS_00043209 other upstream 6031 30979385 ~ 30979499 (+) True XLOC_021782
TCONS_00043184 other upstream 1396972 29588444 ~ 29588558 (+) True XLOC_021766
TCONS_00043178 other upstream 1622685 29357790 ~ 29362845 (+) False XLOC_021762
TCONS_00043179 other upstream 1622997 29357952 ~ 29362533 (+) False XLOC_021762
TCONS_00043174 other upstream 2059490 28925923 ~ 28926040 (+) True XLOC_021760
TCONS_00043219 other downstream 436517 31433273 ~ 31433348 (+) True XLOC_021790
TCONS_00043220 other downstream 436823 31433579 ~ 31433663 (+) True XLOC_021791
TCONS_00043223 other downstream 670673 31667429 ~ 31667543 (+) True XLOC_021793
TCONS_00043229 other downstream 936919 31933675 ~ 31940874 (+) True XLOC_021797
TCONS_00043240 other downstream 1036009 32032765 ~ 32038219 (+) False XLOC_021802

Expression Profile

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