RNA id: TCONS_00043212


Basic Information

Item Value
RNA id TCONS_00043212
length 2333
RNA type mRNA
GC content 0.50
exon number 8
gene id XLOC_021786
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 31107685 ~ 31118371 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGGCCACTGCCTCGGTGTCTGTGCGCGTTGACAGACCGATGAGACTGTTTTAAACAGACTGTCGCTTCGTTTTCAGCGTCTTTATACATCGCCTGTGGTAATTAGCTACTGAAGCGGACTATTCTGTCTCAAGGAATGCTAGATTAAGTGCTGTTGCAAATGCACTTCTGGTGAACTTCTCTTTCTCGGCCAATCTGTCTTCTCGGTCGGTAACCATGGCTGAAAAACGACGGTCCCCGTGTACTATGAGCCTCAAAGCGCACGCATTCTCGGTAGAAGCGCTTATTGGCacggaaaaaaagagaaaattggaGGAGGAGGACAGCGAAAACTGCTTTGAGGAGATAAACGAAGTGCCAAGAATGACAGAAAgtccgcaacccagcactgggagaACTTGTCCCAGCACCAGGAGTTGCGAGATAGATTGCACCAGCGACGAATCCCCGGAGCCTGAGGACGTGTTGTTGGACAGCCCACAACCTGCATCCCAGGGTGCGCAAGTCCTCGTGCAATCAGCCACGAGCTCCGGGGAGGAGATGCGCGTGGACCTGCAGGGCTCAGACTTGTGGAAGCGATTTCACGAGATTGGAACTGAAATGATCATCACCAAAGCCGGCAGGCGAATGTTTCCCGCGATGAGGGTTAAGATTGCGGGACTGGACCCTCATCAGCAGTATTATATCGCTATGGATATTGTTCCTGTCGACAACAAACGCTACAGGTACGTGTACCACAGCTCAAAGTGGATGGTGGCGGGTAACGCCGACTCTCCTGTCCCTCCGCGGGTTTACATTCATCCAGACTCGCCTGCTTCCGGTGAAACGTGGATGCGCCAAGTTATAAGTTTCGACAAGCTCAAACTAACCAATAATGAGCTGGACGACCAAGGCCATATCATTCTGCACTCCATGCACAAGTACCAGCCCCGTGTCCACGTCATCCGTAAGGAGTGCGGAGAAGAGCTCTCGCCTGTTAAGGCGGTTCCTACCGGGGATGGTGTCAAAGCATTTTCCTTCACTGAAACTGTCTTCACGACGGTGACTGCATACCAAAACCAACAGATAACAAGGCTGAAGATCGACAGGAATCCATTTGCAAAGGGATTTAGAGACTCGGGACGAAACAGAATGGGATTAGAGGCACTGGTTGAGTCGTATGCGTTCTGGCGGCCCTCGCTGAGAACTTTGACATTTGAGGACATCCCTGGGATTACTAAACAAgGTGCAGCCGGCTCTCACGGTGTTGTTGGGTCTTCAGCACATCTACTATCCTCATCCTCATGCCCATCCCCTACATTCCACCTTGGTTCTGGGGCAGGACCCGTGTGCGATTACTCCACCTGCAGCCGAACGAGCCACCCCCTCCACCGCTACGGCCCTTCGCTCTCCGCAGACTCCTACAGCCGACTGACCAGCCCCACAGCCGATGCCTTCTCCACTTCTCGCAGCTCCACGTATGTGAGCGGGACAGAGAGCGAAGCCTTCTCCTGCACACAGACTGGCCTGCCAATCCAGATCCACAGCATGCCAAGCACAACCTCCCAGCTGCAATACCTAATGCCCGGCCACGCCCATAATGCATTTTCCACCAATCAGAGCACACAGGGATCATACAATGGCTTTCGGCTACACAATCCGTATGGTCTATACGGTTACAACTTCTCCACTTCTCCACGTCTCGCAACCAGCCCTGAAAAGGCGGCCGCCACGCAGACTTCATTCCTTGGCTCTTCCCCTAGTGGGACACTGACAGACAGGCAGGTTTTATCCACTATGGATGGTCTCCACATGCTCAGTAGTAGTCAACAAAATCTGTTCGACTCGCGGACTTTGGGGCTCACGAGTTCCTCTTCCCAGGTGACAGCCCACATGGCTTGACTCCCCCTCAAAAAAACTTTGATGGACTTCAAACTCAGCTTTTCTTTGAGTATAAACTTGTTTTTGGGACTTGCTAATAGCATAATTTATAATCCGATGGAGATAAAACCGCGATAAAAAGCAAAGAAGACATACCACAGTGTAAAGAACTCTGCAATATCATTTATGTTTCTGTGTAAGTGACAGCTGAAAATCACATTGATGTTTTTTAATAGACTGTATATCTTAAAAATCATTCTGATGAAGCAGTACTCACCATTATTGGACATCAGGGTATGGAAATGCCTGGAGAATCACATGGGAAAGCATGAAAGAACACCAGCCATCGGATCTCATCAAGGTTCAATGAGACCCCACGACTGCTGGTGGGAGTGTGAGGACTTTAACAGATGACTTTTTGTGAGGCTGGATTCAGCGTCTTATggacaataaaaaataagtttgGCACTTAA

Function

GO:

id name namespace
GO:0001708 cell fate specification biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001756 somitogenesis biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0016331 morphogenesis of embryonic epithelium biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-020529-2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including morphogenesis of embryonic epithelium; regulation of transcription by RNA polymerase II; and somitogenesis. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including fin bud; medial longitudinal fasciculus; pectoral fin; pericardial region; and proepicardial cluster. Human ortholog(s) of this gene implicated in CAKUT2. Orthologous to human TBX18 (T-box transcription factor 18).

Ensembl:

ensembl_id ENSDART00000103448

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044850 lncRNA upstream 21734 31078564 ~ 31085951 (+) True XLOC_021785
TCONS_00043203 lncRNA upstream 334799 30764287 ~ 30772886 (+) True XLOC_021777
TCONS_00044849 lncRNA upstream 674300 30402314 ~ 30433385 (+) True XLOC_021774
TCONS_00043197 lncRNA upstream 1097643 30006206 ~ 30010042 (+) False XLOC_021772
TCONS_00043195 lncRNA upstream 1098286 30006206 ~ 30009399 (+) False XLOC_021772
TCONS_00043214 lncRNA downstream 127060 31245431 ~ 31248945 (+) False XLOC_021787
TCONS_00043215 lncRNA downstream 127421 31245792 ~ 31248790 (+) True XLOC_021787
TCONS_00044851 lncRNA downstream 745368 31863739 ~ 31885913 (+) True XLOC_021795
TCONS_00043238 lncRNA downstream 910254 32028625 ~ 32038219 (+) False XLOC_021802
TCONS_00043241 lncRNA downstream 916370 32034741 ~ 32038219 (+) False XLOC_021802
TCONS_00043211 mRNA upstream 85267 31000243 ~ 31022418 (+) True XLOC_021784
TCONS_00043210 mRNA upstream 110929 30985530 ~ 30996756 (+) True XLOC_021783
TCONS_00043208 mRNA upstream 126247 30967686 ~ 30981438 (+) True XLOC_021781
TCONS_00043207 mRNA upstream 188378 30898013 ~ 30919307 (+) True XLOC_021780
TCONS_00043206 mRNA upstream 216835 30859086 ~ 30890850 (+) True XLOC_021779
TCONS_00043213 mRNA downstream 127024 31245395 ~ 31248952 (+) False XLOC_021787
TCONS_00043216 mRNA downstream 287126 31405497 ~ 31423729 (+) True XLOC_021788
TCONS_00043217 mRNA downstream 313585 31431956 ~ 31435922 (+) False XLOC_021789
TCONS_00043218 mRNA downstream 313607 31431978 ~ 31435922 (+) True XLOC_021789
TCONS_00043221 mRNA downstream 477823 31596194 ~ 31605592 (+) False XLOC_021792
TCONS_00043209 other upstream 128186 30979385 ~ 30979499 (+) True XLOC_021782
TCONS_00043184 other upstream 1519127 29588444 ~ 29588558 (+) True XLOC_021766
TCONS_00043178 other upstream 1744840 29357790 ~ 29362845 (+) False XLOC_021762
TCONS_00043179 other upstream 1745152 29357952 ~ 29362533 (+) False XLOC_021762
TCONS_00043174 other upstream 2181645 28925923 ~ 28926040 (+) True XLOC_021760
TCONS_00043219 other downstream 314902 31433273 ~ 31433348 (+) True XLOC_021790
TCONS_00043220 other downstream 315208 31433579 ~ 31433663 (+) True XLOC_021791
TCONS_00043223 other downstream 549058 31667429 ~ 31667543 (+) True XLOC_021793
TCONS_00043229 other downstream 815304 31933675 ~ 31940874 (+) True XLOC_021797
TCONS_00043240 other downstream 914394 32032765 ~ 32038219 (+) False XLOC_021802

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_12718151_12726821.mRNA True 2654 mRNA 0.49 9 CI01000001 12717924 ~ 12727334 (+)