Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00043194 |
| length | 1206 |
| RNA type | mRNA |
| GC content | 0.53 |
| exon number | 11 |
| gene id | XLOC_021771 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 29966466 ~ 29992458 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0060070 | canonical Wnt signaling pathway | biological_process |
| GO:0035556 | intracellular signal transduction | biological_process |
| GO:0090179 | planar cell polarity pathway involved in neural tube closure | biological_process |
| GO:0016055 | Wnt signaling pathway | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0005109 | frizzled binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-090312-40 | Predicted to enable frizzled binding activity. Predicted to be involved in canonical Wnt signaling pathway and planar cell polarity pathway involved in neural tube closure. Predicted to act upstream of or within Wnt signaling pathway and intracellular signal transduction. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in DiGeorge syndrome and autosomal dominant Robinow syndrome 2. Orthologous to human DVL1 (dishevelled segment polarity protein 1). |
| ensembl_id | ENSDART00000035755 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00044848 | lncRNA | upstream | 127058 | 29840859 ~ 29846879 (+) | True | XLOC_021767 |
| TCONS_00044847 | lncRNA | upstream | 390658 | 29580543 ~ 29583279 (+) | True | XLOC_021765 |
| TCONS_00043183 | lncRNA | upstream | 399583 | 29572078 ~ 29574354 (+) | True | XLOC_021764 |
| TCONS_00044846 | lncRNA | upstream | 571841 | 29396181 ~ 29402096 (+) | True | XLOC_021763 |
| TCONS_00044845 | lncRNA | upstream | 613072 | 29358666 ~ 29360865 (+) | True | XLOC_021762 |
| TCONS_00043195 | lncRNA | downstream | 13748 | 30006206 ~ 30009399 (+) | False | XLOC_021772 |
| TCONS_00043197 | lncRNA | downstream | 13748 | 30006206 ~ 30010042 (+) | False | XLOC_021772 |
| TCONS_00043198 | lncRNA | downstream | 13778 | 30006236 ~ 30009190 (+) | True | XLOC_021772 |
| TCONS_00044849 | lncRNA | downstream | 409856 | 30402314 ~ 30433385 (+) | True | XLOC_021774 |
| TCONS_00043203 | lncRNA | downstream | 771829 | 30764287 ~ 30772886 (+) | True | XLOC_021777 |
| TCONS_00043192 | mRNA | upstream | 35736 | 29908348 ~ 29938201 (+) | True | XLOC_021770 |
| TCONS_00043191 | mRNA | upstream | 61674 | 29908348 ~ 29912263 (+) | False | XLOC_021770 |
| TCONS_00043190 | mRNA | upstream | 67774 | 29889129 ~ 29906163 (+) | True | XLOC_021769 |
| TCONS_00043189 | mRNA | upstream | 78679 | 29889089 ~ 29895258 (+) | False | XLOC_021769 |
| TCONS_00043188 | mRNA | upstream | 85144 | 29885019 ~ 29888793 (+) | True | XLOC_021768 |
| TCONS_00043196 | mRNA | downstream | 13748 | 30006206 ~ 30009773 (+) | False | XLOC_021772 |
| TCONS_00043199 | mRNA | downstream | 56391 | 30048849 ~ 30055719 (+) | True | XLOC_021773 |
| TCONS_00043200 | mRNA | downstream | 715379 | 30707837 ~ 30724909 (+) | True | XLOC_021775 |
| TCONS_00043201 | mRNA | downstream | 737663 | 30730121 ~ 30752553 (+) | False | XLOC_021776 |
| TCONS_00043202 | mRNA | downstream | 744437 | 30736895 ~ 30751969 (+) | True | XLOC_021776 |
| TCONS_00043184 | other | upstream | 385379 | 29588444 ~ 29588558 (+) | True | XLOC_021766 |
| TCONS_00043178 | other | upstream | 611092 | 29357790 ~ 29362845 (+) | False | XLOC_021762 |
| TCONS_00043179 | other | upstream | 611404 | 29357952 ~ 29362533 (+) | False | XLOC_021762 |
| TCONS_00043174 | other | upstream | 1047897 | 28925923 ~ 28926040 (+) | True | XLOC_021760 |
| TCONS_00043173 | other | upstream | 1070481 | 28903330 ~ 28903456 (+) | True | XLOC_021759 |
| TCONS_00043209 | other | downstream | 986927 | 30979385 ~ 30979499 (+) | True | XLOC_021782 |
| TCONS_00043219 | other | downstream | 1440815 | 31433273 ~ 31433348 (+) | True | XLOC_021790 |
| TCONS_00043220 | other | downstream | 1441121 | 31433579 ~ 31433663 (+) | True | XLOC_021791 |
| TCONS_00043223 | other | downstream | 1674971 | 31667429 ~ 31667543 (+) | True | XLOC_021793 |
| TCONS_00043229 | other | downstream | 1941217 | 31933675 ~ 31940874 (+) | True | XLOC_021797 |
