RNA id: TCONS_00043200


Basic Information

Item Value
RNA id TCONS_00043200
length 2892
RNA type mRNA
GC content 0.45
exon number 16
gene id XLOC_021775
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 30707837 ~ 30724909 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTGGGGGCGGGGATGAAAGGTGGTAAATATGGCGGCGGCCTTGGAGGAAGATGAAATTGACAATGATGACTATTATTCTCTGTTAAACGTCCGCAGAGAGGCCACACAGGAAGAGCTCAAGGCTTCATATCGCCGTCTTTGCATGCTGTACCACCCAGACAAGCACAGAGATCCAGAGCTCAAGAAACAGGCAGAGCAGCTTTTTAACTTGGTCCACCAAGCATACGAAGTGCTTAGCGACCCTCAAGCTAGAGCAATTTATGACATATATGGGAAGAAAGGGTTGGATGTTGAAGGATGGGAGgTAGTGGAGAGGAAAAGAACACCAGCAGAGATTCGTGAAGAGTATGAGCGActtcaaagagagagagaggagagaagaCTACAGCAAAGGACCAACCCTAAGGGGACAATAAGTGTGGGCATTGATGCGACAGACCTCTTTGATTACTATGAGGAGGATTATGATGAGATCTCTGGTGGTGGCGGAGGTGGAGGTTTACCGCACATTGAGATCAACAAGATGCACATATCCCAGTCCATAGAGGCCCCTCTGACCACTTCAGACACGGCAGTTCTTTCTGGCTCTCTCTCCACACACAATGGCAATGGAGGAGGAAACATAAGCTTGGCCTTGCGACGCGTCACCTCGGCTAAAGGCTGGGGAGAGGTTGAGTTTGGGGCAGGAGACACACATGGCCCTCTCTTCGGCCTAAAGATTTTCCGTAACCTGACTTCACGCTGCTTCACAACAGCTCATTGTGGCTTGCAGTTTTCATCGCGTGGCATACGGCCGGGTCTCACTACTATGCTTGCACGTCACCTAGACAAAAACACTATGGGTTATTTACAGTGGCGCTGGGGAACTCAGTCTTCCATGAACACCAGCATCGTGAGGGACACCAAAAGCAGCCATTTCACATTTGCTGTGCAGTTGGGAATTCCACATACATTTATCATGATGAGCTACCAGTACAAATTCCAGGATGATGATCAGACCAAGATCAAGGGCTCTGTCAAGTCAGGGTTTTTCGGCACTGTGGTGGAATATGGTGCTGAGACTAAAATCAGTCGGCACAGTGTCCTGGGCGCCACCGTCAGCATTGGAGTACCTCAGGGCGTTTCGCTCAAGATCAAGCTGAACCGAGCGAGTCAGACGTACTTCTTCCCCATCCACTTAACAGAGCAGCTTCTTCCCAGCGCTGTGTTTTATGCCACCGTCGGACCCCTCGTGTTCTACTTGGCCATCCAGCGACTGGTTATCAAACCTTATGTTCGTGCTCAGCAGGAACAGGAGCTGGAGAAGCAGCGGGAGAGTTCGGCGTCAGACGTTGCCAAGAAGAAGCAAGAGGCAGAAGCAGCTGTTCTGCTGATGCAGGAGTCTGTGCGCAGAATTATCGAAGCAGAGGAGTCTAAGATGGgtCTGATCATCCTCAATGCCTGGTATGGCAAGTTTGTGACGGACAACAGCCGTAAGCATGAAAGGGCAAGGGTCATTGATGTGACAGTGCCTCTACAGTGTCTGGTGAAGGACTCTAAGCTCATGCTCACAGAAGCATCTAAGGCTGGATTACCGGGCTTCTATGACCCCTGCGTGGGTGAGGAGAAGAGTCTGAAGGTGCTCTATCAGTTCAGAGGTGTGATGCACCAAGTTCTATGTGGTGACACAGAAGCACTCAGGATACCAAAACAATCCCACAGGATTGATAATGACACCTAGGAACATGTATCTCTTGAGCTGAATGGGGGACAGCTTGGACTGGTATAGACTGATGAGACAGAGTAGTGCCCTGGAAACACTCTGTGCCCTTAGAAGTCTTCATATACCTATTTATCCTTTATTTTGTGCTCTTTTAAATACTATTCTTCACAATGTCTGTTTCGCAAAGTAGAACATTTGCATTGGAACGTTTAATTTGCTGGATTTCCACtaataaaatgatgacctttgcCAGAAAAACCAgacaacataaatatataattttttgcgTTGGCAGGcctttaaacctttttaaaacagAGGCCCTCTTCCTGAAATATGGATCCACAACAGTGCCTGTAATCAGAATTTACCAGAGAGAGCTATTTTATCCTCATTACATCACTGAGAAACCATTGCTGCTTGATCCGATTCACTGAATCCCGCAGGAGCTGGCGAATCCCAGTTGTCAGCCTACTTTCTATGACTGACTTTTTGTACCACCAGTTTCCCAATAAACGATCTTGCAATTATTTAGGAGGAAAAGCATGTCCTTAGTGATaatcatttacattatttttctcCTCGATCACATTATTTTGGCTGTAAGAATTGACAATATGCAGGTACTGTTAGCGTGTGGTTGTTGAGGAAAGAGAGTGTGAACTGTGTGCTAAATCTCATGTAGGACTAGCCTCCCACCTTGTGTCCAAAGACTTGAATAGCAGTGGATGAAGGGAAAGTAATGGAACTTGTATTTTGGGTTTGATGTCCTTTACTCCCTTCATTCTAGTGCCATAATTCATACAGGGAACATCTACATCCCCATTCAATCTTCTTTCAGGTTGATTTAACTATTTGTTGCCTTTTTGGTGTTTGAGGACTTTATGCAAGTACTTTAATTTCTGTTTTGATTTATCTTATATTTGAAAGACTGTATGGAATGTCTTTTTTTGTGGAGGAGGGCGGtcataatttatttgaaatgtgtCCATTCTGCACACTTGCCAGTTGAATGATGTTAAAACAACAATCTATAACTGTTGACTGGAGTATTGGTTTGTTCAAAGGAGTTGATTGTTAAATTTCACCCAATGGCCATTTGCAGCAGGTATAGACTGCAAAAAATCATCGCTTTTAAAATAAATCGTTaaagaaacaatggaaataaatattgattttgaATGGGGTA

Function

GO:

id name namespace
GO:0042407 cristae formation biological_process
GO:0061617 MICOS complex cellular_component
GO:0005739 mitochondrion cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1673 Predicted to be involved in cristae formation. Orthologous to human DNAJC11 (DnaJ heat shock protein family (Hsp40) member C11).

Ensembl:

ensembl_id ENSDART00000016096

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044849 lncRNA upstream 274452 30402314 ~ 30433385 (+) True XLOC_021774
TCONS_00043197 lncRNA upstream 697795 30006206 ~ 30010042 (+) False XLOC_021772
TCONS_00043195 lncRNA upstream 698438 30006206 ~ 30009399 (+) False XLOC_021772
TCONS_00043198 lncRNA upstream 698647 30006236 ~ 30009190 (+) True XLOC_021772
TCONS_00044848 lncRNA upstream 860958 29840859 ~ 29846879 (+) True XLOC_021767
TCONS_00043203 lncRNA downstream 39378 30764287 ~ 30772886 (+) True XLOC_021777
TCONS_00044850 lncRNA downstream 353655 31078564 ~ 31085951 (+) True XLOC_021785
TCONS_00043214 lncRNA downstream 520522 31245431 ~ 31248945 (+) False XLOC_021787
TCONS_00043215 lncRNA downstream 520883 31245792 ~ 31248790 (+) True XLOC_021787
TCONS_00044851 lncRNA downstream 1138830 31863739 ~ 31885913 (+) True XLOC_021795
TCONS_00043199 mRNA upstream 652118 30048849 ~ 30055719 (+) True XLOC_021773
TCONS_00043196 mRNA upstream 698064 30006206 ~ 30009773 (+) False XLOC_021772
TCONS_00043193 mRNA upstream 715379 29966466 ~ 29992458 (+) False XLOC_021771
TCONS_00043194 mRNA upstream 715379 29973937 ~ 29992458 (+) True XLOC_021771
TCONS_00043192 mRNA upstream 769636 29908348 ~ 29938201 (+) True XLOC_021770
TCONS_00043201 mRNA downstream 5212 30730121 ~ 30752553 (+) False XLOC_021776
TCONS_00043202 mRNA downstream 11986 30736895 ~ 30751969 (+) True XLOC_021776
TCONS_00043204 mRNA downstream 103050 30827959 ~ 30845859 (+) False XLOC_021778
TCONS_00043205 mRNA downstream 110680 30835589 ~ 30845859 (+) True XLOC_021778
TCONS_00043206 mRNA downstream 134177 30859086 ~ 30890850 (+) True XLOC_021779
TCONS_00043184 other upstream 1119279 29588444 ~ 29588558 (+) True XLOC_021766
TCONS_00043178 other upstream 1344992 29357790 ~ 29362845 (+) False XLOC_021762
TCONS_00043179 other upstream 1345304 29357952 ~ 29362533 (+) False XLOC_021762
TCONS_00043174 other upstream 1781797 28925923 ~ 28926040 (+) True XLOC_021760
TCONS_00043173 other upstream 1804381 28903330 ~ 28903456 (+) True XLOC_021759
TCONS_00043209 other downstream 254476 30979385 ~ 30979499 (+) True XLOC_021782
TCONS_00043219 other downstream 708364 31433273 ~ 31433348 (+) True XLOC_021790
TCONS_00043220 other downstream 708670 31433579 ~ 31433663 (+) True XLOC_021791
TCONS_00043223 other downstream 942520 31667429 ~ 31667543 (+) True XLOC_021793
TCONS_00043229 other downstream 1208766 31933675 ~ 31940874 (+) True XLOC_021797

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_12486765_12495297.mRNA True 3033 mRNA 0.46 15 CI01000001 12485546 ~ 12495518 (+)