Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00043177 |
| length | 1773 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 6 |
| gene id | XLOC_021762 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 29357790 ~ 29362845 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007519 | skeletal muscle tissue development | biological_process |
| GO:0007528 | neuromuscular junction development | biological_process |
| GO:0048514 | blood vessel morphogenesis | biological_process |
| GO:0007626 | locomotory behavior | biological_process |
| GO:0048675 | axon extension | biological_process |
| GO:0007409 | axonogenesis | biological_process |
| GO:0005654 | nucleoplasm | cellular_component |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-031030-1 | Predicted to enable RNA binding activity. Acts upstream of or within several processes, including axon extension; neuromuscular junction development; and skeletal muscle tissue development. Predicted to be located in nucleus. Predicted to be active in nucleoplasm. Is expressed in brain and fin. Human ortholog(s) of this gene implicated in Parkinson's disease; amyotrophic lateral sclerosis; amyotrophic lateral sclerosis type 10; and motor neuron disease. Orthologous to several human genes including TARDBP (TAR DNA binding protein). |
| ensembl_id | ENSDART00000141928 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00043175 | lncRNA | upstream | 397481 | 28944314 ~ 28960309 (+) | False | XLOC_021761 |
| TCONS_00044843 | lncRNA | upstream | 397481 | 28944448 ~ 28960309 (+) | False | XLOC_021761 |
| TCONS_00044844 | lncRNA | upstream | 397481 | 28953505 ~ 28960309 (+) | True | XLOC_021761 |
| TCONS_00044676 | lncRNA | upstream | 461710 | 28895775 ~ 28896080 (+) | True | XLOC_021758 |
| TCONS_00043168 | lncRNA | upstream | 584674 | 28770322 ~ 28773116 (+) | True | XLOC_021754 |
| TCONS_00044846 | lncRNA | downstream | 34563 | 29396181 ~ 29402096 (+) | True | XLOC_021763 |
| TCONS_00043183 | lncRNA | downstream | 210460 | 29572078 ~ 29574354 (+) | True | XLOC_021764 |
| TCONS_00044847 | lncRNA | downstream | 218925 | 29580543 ~ 29583279 (+) | True | XLOC_021765 |
| TCONS_00044848 | lncRNA | downstream | 479241 | 29840859 ~ 29846879 (+) | True | XLOC_021767 |
| TCONS_00043195 | lncRNA | downstream | 644588 | 30006206 ~ 30009399 (+) | False | XLOC_021772 |
| TCONS_00043171 | mRNA | upstream | 432033 | 28809002 ~ 28925757 (+) | False | XLOC_021757 |
| TCONS_00043172 | mRNA | upstream | 435703 | 28809024 ~ 28922087 (+) | True | XLOC_021757 |
| TCONS_00043166 | mRNA | upstream | 561633 | 28770225 ~ 28796157 (+) | False | XLOC_021754 |
| TCONS_00043167 | mRNA | upstream | 564901 | 28770301 ~ 28792889 (+) | False | XLOC_021754 |
| TCONS_00043165 | mRNA | upstream | 625477 | 28731379 ~ 28732313 (+) | True | XLOC_021753 |
| TCONS_00043181 | mRNA | downstream | 208275 | 29569893 ~ 29574744 (+) | False | XLOC_021764 |
| TCONS_00043182 | mRNA | downstream | 208768 | 29570386 ~ 29575691 (+) | False | XLOC_021764 |
| TCONS_00043185 | mRNA | downstream | 521598 | 29883216 ~ 29887477 (+) | False | XLOC_021768 |
| TCONS_00043186 | mRNA | downstream | 521598 | 29883216 ~ 29887478 (+) | False | XLOC_021768 |
| TCONS_00043187 | mRNA | downstream | 521603 | 29883221 ~ 29887272 (+) | False | XLOC_021768 |
| TCONS_00043174 | other | upstream | 431750 | 28925923 ~ 28926040 (+) | True | XLOC_021760 |
| TCONS_00043173 | other | upstream | 454334 | 28903330 ~ 28903456 (+) | True | XLOC_021759 |
| TCONS_00043170 | other | upstream | 557571 | 28800103 ~ 28800219 (+) | True | XLOC_021756 |
| TCONS_00043169 | other | upstream | 560242 | 28797426 ~ 28797548 (+) | True | XLOC_021755 |
| TCONS_00043161 | other | upstream | 742848 | 28614827 ~ 28614942 (+) | True | XLOC_021750 |
| TCONS_00043184 | other | downstream | 226826 | 29588444 ~ 29588558 (+) | True | XLOC_021766 |
| TCONS_00043209 | other | downstream | 1617767 | 30979385 ~ 30979499 (+) | True | XLOC_021782 |
| TCONS_00043219 | other | downstream | 2071655 | 31433273 ~ 31433348 (+) | True | XLOC_021790 |
| TCONS_00043220 | other | downstream | 2071961 | 31433579 ~ 31433663 (+) | True | XLOC_021791 |
| TCONS_00043223 | other | downstream | 2305811 | 31667429 ~ 31667543 (+) | True | XLOC_021793 |
