RNA id: TCONS_00043165


Basic Information

Item Value
RNA id TCONS_00043165
length 795
RNA type mRNA
GC content 0.44
exon number 2
gene id XLOC_021753
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 28731379 ~ 28732313 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTCTCAAAGACCCAGCTTTACTCACCACCAGGAGCTACAAGGACTTCAAAGTTCCTGCTTTCACTACTCTTACTGACCTTTCGCCGCACTTTAACTTCAACCATTTTATAAGTATGCAGCTTTTGGCCAGCCTAGTGTCTCTCTTGCTGGTGCTGTATAGTGTCAGAGCAGCAGCTGTGCTTCCACTGGAGGAGAGGAACCCAGCACAAAGTAGGGAGTTGAGTAAAGAGCGTAAGGAGCTCATCTTGAAGCTGATCTCTGGGCTGCTGGATGGAGTAGACAACAGCGTTCTGGCTGGAGAGATAGCACCAGTCCCCTTGGATGTGGAGGAGCCCCTGGAGTCCCGTCTGGAGGAACGGGCTGTCTACAACCGATTATCACAGCTACCGCAGCGTGACCGCAAAGCCCCCTGCAAAAACTTCTTCTGGAAGACCTTCACGTCGTGTTAACGGCGCAAGTCCTGCAACGATCCTCGCTGATACCTTGACATGAACTGTGTAGACCTCCACTGTAAATAATACCATCTCCAGTGTCTGAAGAAAGGTCTCCGTGGACTTACTCTGACACAGTCTGTTTGTTAAAGACATTgatgatatttatttatctatttatttattgatcgaTTAAGCTATTTATGGACCTTTGTTGTTTTTccgcattaaaaaaagaataaagcatGGTTAAGATAGTTGCTTTTTTTGATAAAAGATGTCTCATTTACTGTGGTCAACATTGGGAAAAGCTTCAAATTATGTTATGCTGActtctgaataaatatataattgatTACCGAG

Function

GO:

id name namespace
GO:0030334 regulation of cell migration biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005179 hormone activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

ZFIN:

id description
ZDB-GENE-030813-3 Predicted to enable hormone activity. Predicted to be involved in regulation of cell migration. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in brain and ovary. Orthologous to human CORT (cortistatin).

Ensembl:

ensembl_id ENSDART00000047378

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044840 lncRNA upstream 310795 28390713 ~ 28420584 (+) False XLOC_021745
TCONS_00043168 lncRNA downstream 38009 28770322 ~ 28773116 (+) True XLOC_021754
TCONS_00044676 lncRNA downstream 163462 28895775 ~ 28896080 (+) True XLOC_021758
TCONS_00043175 lncRNA downstream 212001 28944314 ~ 28960309 (+) False XLOC_021761
TCONS_00044843 lncRNA downstream 212135 28944448 ~ 28960309 (+) False XLOC_021761
TCONS_00044844 lncRNA downstream 221192 28953505 ~ 28960309 (+) True XLOC_021761
TCONS_00043164 mRNA upstream 4273 28718863 ~ 28727106 (+) True XLOC_021752
TCONS_00043163 mRNA upstream 17397 28693278 ~ 28713982 (+) True XLOC_021751
TCONS_00043160 mRNA upstream 49604 28582865 ~ 28681775 (+) False XLOC_021749
TCONS_00043162 mRNA upstream 49604 28648864 ~ 28681775 (+) True XLOC_021749
TCONS_00043156 mRNA upstream 162401 28494189 ~ 28568978 (+) False XLOC_021746
TCONS_00043166 mRNA downstream 37912 28770225 ~ 28796157 (+) False XLOC_021754
TCONS_00043167 mRNA downstream 37988 28770301 ~ 28792889 (+) False XLOC_021754
TCONS_00043171 mRNA downstream 76689 28809002 ~ 28925757 (+) False XLOC_021757
TCONS_00043172 mRNA downstream 76711 28809024 ~ 28922087 (+) True XLOC_021757
TCONS_00043176 mRNA downstream 625477 29357790 ~ 29360865 (+) False XLOC_021762
TCONS_00043161 other upstream 116437 28614827 ~ 28614942 (+) True XLOC_021750
TCONS_00043159 other upstream 194601 28536665 ~ 28536778 (+) True XLOC_021748
TCONS_00043158 other upstream 194922 28536361 ~ 28536457 (+) True XLOC_021747
TCONS_00043142 other upstream 405538 28323080 ~ 28325841 (+) False XLOC_021743
TCONS_00043140 other upstream 582426 28140317 ~ 28148953 (+) True XLOC_021742
TCONS_00043169 other downstream 65113 28797426 ~ 28797548 (+) True XLOC_021755
TCONS_00043170 other downstream 67790 28800103 ~ 28800219 (+) True XLOC_021756
TCONS_00043173 other downstream 171017 28903330 ~ 28903456 (+) True XLOC_021759
TCONS_00043174 other downstream 193610 28925923 ~ 28926040 (+) True XLOC_021760
TCONS_00043178 other downstream 625477 29357790 ~ 29362845 (+) False XLOC_021762

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_11246797_11247315.mRNA True 710 mRNA 0.49 2 CI01000001 11246649 ~ 11247541 (+)