XLOC_021749 (l1cama)


Basic Information

Item Value
gene id XLOC_021749
gene name l1cama
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 28582865 ~ 28681775 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043160
ACAACCTTCAGGGACACCGAAAACGCCACACACAACCTGAAGCTCTTTCTGAACTGCAGAGTGATCTTTTGCATCAGGAGGGTGTGGACCTGAGAGAAACACACAGGAGGAAGACACAGTGCTCTTCTCTGAGTGGAATAATCCACGGCTTTCCTGCACcgctgtgtttgtgtctgtcagCAGGTGCAATGCCTGCCACGTCACAAAAACAGCAGGTGAGCAGCAGGGGGCGATGCACGGCTCTCCTGCTTCCTCTCCTTCTGCTAGCAGTGGCTCTAAAACCCGGGAACACCACCATCAACATCCCATCCAGATACAAAATAAGAGACTTGAAAAGCCCCCCGGTGATTACGGCCCAGCCGAAATCTGTCACCACCTTTTCGGCTGATGACATCACGCTCACCTGTGATGCCACTGGGAATCCCCCTCCCACGTTCCGCTGGGTGAAAGATGGTGTGGAGTTTGACCCCTCTAAAGACCCTGACCTCTCTGTATCCCGAGATTCTGGCACTTTTTCACTGACAGCCAAAGATGGACCCATCCACCAGTACCAGGGCAGATACAACTGCTATGCCTCTAACGAGCTCGGCACGGCGGTGTCTAATGAGGCTCGCATCGTCACAGAGAACACTCCTACTCTACAGAAGGAAAAGATCATTACAAAGAAGGTGGAGGAAGGAGAGAGTGTGGTGCTTCCCTGTAATCCTCCTAACGGCACTGTAGCTCCGGTCATCCACTGGATGGATAAGAAGCTGCGGCACATTCAGCAAAATGAGCGTGTGATTCAGGGTCGTGACGGGAACCTGTACTTCTCTCATGCAACTGTGGCAGACAGTAGAGATGACTACACCTGCAACATTCAGTTCCCCAGCGCACGCGTCATCAAGCTCAAGGAGCCAATCAAACTCACTGTTTCTTCCTCAAACTCAGTGGTGCGGAACAGAAGGCCACAGATGATGCGTCCCACTGGCTCCAGCAGCTCCTACCTGGTACTCAGCGGACAAAACCTGGAGCTGGAGTGCATCGTTCAGGGCCTTCCCTCTCCCAGTATCCAGTGGATCAGGAAAGATGGAGTCCTGTCTGAGTCACGCACTACCAAAGATAGCAATGACAGAGTTCTGCGTTTTCAAAATATCTCAGAGACTGACGGTGGCGAGTACCAGTGTACGGCAACCAATCCACAGGGCATGAGCACTCACACCTACAGAGTCACGGTGGAAGCTGCTCCGTATTGGATTAAAGAACCAAAGAGCCAACTGTACGCCCCAGGAGAGACTGTCAAACTGGAATGTAAGGCTGATGGCATTCCCAAACCTGAGGTCACCTGGAGCATCAATGGCATTCTACTTTCTGATATTGATCCAGACCCCCGACGCAGCGTGAAACATGGCGTTCTCACTCTGAAGAATGTGGAACTCAGCGACACTGCGGTTTTTCAGTGTAAAGCAGCCAGTAAACATGGATCTGTCCTCATCAATGCCTATGTCTATGTTATAGAGCTGCCTCCTCAGATTCTGACAGAAGACGGCCTCATGTACTCCGTGGCAGAGGGACAGACCACTGAATTGGCTTGCGAGACCTTTGGATCTCCTCGGCCCAATGTCACATGGGAGGGAGAGTCCTGGGGCGCTCTTGTAGCCAATCAGAGGATGATTCAGTTATCTGACGGTTCTCTACAGATCAGTAACGCCTCGCTCAATGACAGTGGCCAGTACACCTGCACTGTCAACAACAGTAAAATCACCATCACCGCTGAGCTTGATGTACTCAATAAGACAGTGATTGTGAAGCCTCCTCTGGCTCTGCGAATTCAGCGGGGGAAACCGGCAACCCTCACCTGCGAGTACCAGGTGGACTCCAGACAGGACCTCCCTCAAGTCCAGTGGAGGAAGAACACGCAGAAGCTTACAGAGTCCTCGGATTCAGACAAGTACATGATAGATGAATCCACCCTCATAATACCTGAGGTGGAAGAAGAGGATGAAGGGACTTATACATGTGAAGTCATTACCACACTGGATATGGCTAAAGCTAGTGGCTCCATCACTATCGTCGACCGACCAGACCCTCCGAGCCTAATACAGATGACCGAACCCAAAGAACGCAGAGTCACTCTCAGCTGGACACCAGGAGCGGATCACAACAGCCCTGTGCTAGAATATTTGATTGAGTTTGAGGAGACGGGATCTGACAGAAAGGAATGGGAAGAGCTCAGCCGTGTGTCCGGCAGCAGTCAGCGAGCTACTCTTCCCCTAAAGCCCTTCATTTCTTACCGTTTCCGAGTCATTGCCATTAATGAAATCGGCAAGAGTGACCCCAGCATGGTTACAGAGGCCTATTCCACACCAGCTGCTCCTCCAGACAGCAACCCTGAAGGAGTGCGCAGTGATTCCGACGAGCCAGGCACCCTTGTCATCACGTGGAAGGAGATGGACAGGCGTAGCTTCAATGGCCCAGATTTCCACTATAAAGTGATGTGGAGGAAAGTTTTGGGCAGCGGTCCATCCTGGCACACCAAAGACATCACCTCTCCACCCTTCGTTGTCACAGATGTGGGCAACTTCTCAGCATTTGACATTAAAGTGCAAGCGGTTAATGAGATGGGAGAAGGTCCGGAGCCCAAATCAATTATTGGATACTCTGGGGAGGACTACCCTCTTGAGGCTCCTCTGGATGTGGGATTGATTCTGATCAACAGCACTGCTATTAAAGTGACATGGGCGGCCGTGAACAGGGAAACTGTGAGGGGTCGTCTGCAGGGGTACAAGATTTATCTGACGTACTTAGGCCCAAAAGGCCAACACCTCAGACGGGAGCCAAAAACCACATTTGTTGTGACGACAGACAGTAATGAGGAGAAGAAGGTTTTGGGAGATCTGCAACCGTTCTCCCATTACAATCTGGCTGTAAGTGTCTTCAACTATAAAGGAGAAGGACCCCAGTCTGAATCCATCTTATTCTTCACTCCAGAAGGAGTTCCGGGTCCTCCATCATCTTTGATGTTGGATAGCCCATCAGAAACAGAAATGACAGTGCACTGGACTCCGCCCAACCAGCCAAATGGAAACCTGATTGGATACATCTTACAGCATCAACAACTTGATAATGATGCCAGCCTTATGCAGGTGGTCAAGATTAGTGACCCCACTGCTTCCCACTACAAATTAAAACTGGACCCTCACAGCCGTTACCGCTTCTATCTGCGAGGATACACGGCTATCGGAGAAGGACTGCCCATCATCAAGGATGGAGCCACCACACTGGATCCAGTTCCGCCCTCCGACATTAGCATATCGACTGGAGAGACATCAGTCAACCTGACCTGGGTGTCAAAAGAAAGACAGAGGAACGTGGAATTCTTTATTCATTACCTGAGAAAGGATGGCCCAGACAAATGGGAGAAATCTGAAAAGGTGAACAGCACTCAGTCTTTCTACACACTGCATGGGCTCCAGCCTGGATCCCAGTACCGGCTGAAGATCGACTTTAACAACACTAAATGGGAGCAAGAGATCCAGACTGCAGGAGCTAGAGTCATGGAGGTGAAAAGTGGGTTTGTAACCGAGAGCTGGTTTATTGGACTCATCAGTGCCCTCGTGCTGTTGCTGTTGGTACTGCTCATCCTGTGTTTCATAAAACGAAGCAAAGGTGGAAAATACTCAGTTAAAGAAAAGGAAGAAGGCCAAATAGATTCTGAAGCTCGGCCAATGAATAATGAAGCTTTTGGAGAGTACAGATCGCTAGAGAGTGACAATGAGGAGAAGCGTACAGCCAGTCAGCCGTCTCTGTGCGAGGACAGTAAGCTATGTACCGACGATGGTCTAGACGACTACGCCAACAGCAACAGCGTGCAGACCGAGGTCATCATGGACGAGTCGCTGGCCAGTCAAAGCAGCGGAGTGCGAGATGTTCCTGATGCCGAGACTCAGGAAAGTTCCCCTCTAAATCCTGCCACAGCCATCTCTCACCATGGCCTGCCCAACTCCGCCGCCCTCCTTGACTAGCCGGGCGAGCCTGAGACCAAACGTGGATTCACACATGTGCCCACCTATTGCAACCGCTCATGTCTGACCAAATCTTCAAAAACCCACAATAACGAGACCTGCACACACAACAGAT
>TCONS_00043162
TTTCCTGCACcgctgtgtttgtgtctgtcagCAGGTGCAATGCCTGCCACGTCACAAAAACAGCAGGTGAGCAGCAGGGGGCGATGCACGGCTCTCCTGCTTCCTCTCCTTCTGCTAGCAGTGGCTCTAAAACCCGGGAACACCACCATCAACATCCCATCCAGATACAAAATAAGAGACTTGAAAAGCCCCCCGGTGATTACGGCCCAGCCGAAATCTGTCACCACCTTTTCGGCTGATGACATCACGCTCACCTGTGATGCCACTGGGAATCCCCCTCCCACGTTCCGCTGGGTGAAAGATGGTGTGGAGTTTGACCCCTCTAAAGACCCTGACCTCTCTGTATCCCGAGATTCTGGCACTTTTTCACTGACAGCCAAAGATGGACCCATCCACCAGTACCAGGGCAGATACAACTGCTATGCCTCTAACGAGCTCGGCACGGCGGTGTCTAATGAGGCTCGCATCGTCACAGAGAACACTCCTACTCTACAGAAGGAAAAGATCATTACAAAGAAGGTGGAGGAAGGAGAGAGTGTGGTGCTTCCCTGTAATCCTCCTAACGGCACTGTAGCTCCGGTCATCCACTGGATGGATAAGAAGCTGCGGCACATTCAGCAAAATGAGCGTGTGATTCAGGGTCGTGACGGGAACCTGTACTTCTCTCATGCAACTGTGGCAGACAGTAGAGATGACTACACCTGCAACATTCAGTTCCCCAGCGCACGCGTCATCAAGCTCAAGGAGCCAATCAAACTCACTGTTTCTTCCTCAAACTCAGTGGTGCGGAACAGAAGGCCACAGATGATGCGTCCCACTGGCTCCAGCAGCTCCTACCTGGTACTCAGCGGACAAAACCTGGAGCTGGAGTGCATCGTTCAGGGCCTTCCCTCTCCCAGTATCCAGTGGATCAGGAAAGATGGAGTCCTGTCTGAGTCACGCACTACCAAAGATAGCAATGACAGAGTTCTGCGTTTTCAAAATATCTCAGAGACTGACGGTGGCGAGTACCAGTGTACGGCAACCAATCCACAGGGCATGAGCACTCACACCTACAGAGTCACGGTGGAAGCTGCTCCGTATTGGATTAAAGAACCAAAGAGCCAACTGTACGCCCCAGGAGAGACTGTCAAACTGGAATGTAAGGCTGATGGCATTCCCAAACCTGAGGTCACCTGGAGCATCAATGGCATTCTACTTTCTGATATTGATCCAGACCCCCGACGCAGCGTGAAACATGGCGTTCTCACTCTGAAGAATGTGGAACTCAGCGACACTGCGGTTTTTCAGTGTAAAGCAGCCAGTAAACATGGATCTGTCCTCATCAATGCCTATGTCTATGTTATAGAGCTGCCTCCTCAGATTCTGACAGAAGACGGCCTCATGTACTCCGTGGCAGAGGGACAGACCACTGAATTGGCTTGCGAGACCTTTGGATCTCCTCGGCCCAATGTCACATGGGAGGGAGAGTCCTGGGGCGCTCTTGTAGCCAATCAGAGGATGATTCAGTTATCTGACGGTTCTCTACAGATCAGTAACGCCTCGCTCAATGACAGTGGCCAGTACACCTGCACTGTCAACAACAGTAAAATCACCATCACCGCTGAGCTTGATGTACTCAATAAGACAGTGATTGTGAAGCCTCCTCTGGCTCTGCGAATTCAGCGGGGGAAACCGGCAACCCTCACCTGCGAGTACCAGGTGGACTCCAGACAGGACCTCCCTCAAGTCCAGTGGAGGAAGAACACGCAGAAGCTTACAGAGTCCTCGGATTCAGACAAGTACATGATAGATGAATCCACCCTCATAATACCTGAGGTGGAAGAAGAGGATGAAGGGACTTATACATGTGAAGTCATTACCACACTGGATATGGCTAAAGCTAGTGGCTCCATCACTATCGTCGACCGACCAGACCCTCCGAGCCTAATACAGATGACCGAACCCAAAGAACGCAGAGTCACTCTCAGCTGGACACCAGGAGCGGATCACAACAGCCCTGTGCTAGAATATTTGATTGAGTTTGAGGAGACGGGATCTGACAGAAAGGAATGGGAAGAGCTCAGCCGTGTGTCCGGCAGCAGTCAGCGAGCTACTCTTCCCCTAAAGCCCTTCATTTCTTACCGTTTCCGAGTCATTGCCATTAATGAAATCGGCAAGAGTGACCCCAGCATGGTTACAGAGGCCTATTCCACACCAGCTGCTCCTCCAGACAGCAACCCTGAAGGAGTGCGCAGTGATTCCGACGAGCCAGGCACCCTTGTCATCACGTGGAAGGAGATGGACAGGCGTAGCTTCAATGGCCCAGATTTCCACTATAAAGTGATGTGGAGGAAAGTTTTGGGCAGCGGTCCATCCTGGCACACCAAAGACATCACCTCTCCACCCTTCGTTGTCACAGATGTGGGCAACTTCTCAGCATTTGACATTAAAGTGCAAGCGGTTAATGAGATGGGAGAAGGTCCGGAGCCCAAATCAATTATTGGATACTCTGGGGAGGACTACCCTCTTGAGGCTCCTCTGGATGTGGGATTGATTCTGATCAACAGCACTGCTATTAAAGTGACATGGGCGGCCGTGAACAGGGAAACTGTGAGGGGTCGTCTGCAGGGGTACAAGATTTATCTGACGTACTTAGGCCCAAAAGGCCAACACCTCAGACGGGAGCCAAAAACCACATTTGTTGTGACGACAGACAGTAATGAGGAGAAGAAGGTTTTGGGAGATCTGCAACCGTTCTCCCATTACAATCTGGCTGTAAGTGTCTTCAACTATAAAGGAGAAGGACCCCAGTCTGAATCCATCTTATTCTTCACTCCAGAAGGAGTTCCGGGTCCTCCATCATCTTTGATGTTGGATAGCCCATCAGAAACAGAAATGACAGTGCACTGGACTCCGCCCAACCAGCCAAATGGAAACCTGATTGGATACATCTTACAGCATCAACAACTTGATAATGATGCCAGCCTTATGCAGGTGGTCAAGATTAGTGACCCCACTGCTTCCCACTACAAATTAAAACTGGACCCTCACAGCCGTTACCGCTTCTATCTGCGAGGATACACGGCTATCGGAGAAGGACTGCCCATCATCAAGGATGGAGCCACCACACTGGATCCAGTTCCGCCCTCCGACATTAGCATATCGACTGGAGAGACATCAGTCAACCTGACCTGGGTGTCAAAAGAAAGACAGAGGAACGTGGAATTCTTTATTCATTACCTGAGAAAGGATGGCCCAGACAAATGGGAGAAATCTGAAAAGGTGAACAGCACTCAGTCTTTCTACACACTGCATGGGCTCCAGCCTGGATCCCAGTACCGGCTGAAGATCGACTTTAACAACACTAAATGGGAGCAAGAGATCCAGACTGCAGGAGCTAGAGTCATGGAGGTGAAAAGTGGGTTTGTAACCGAGAGCTGGTTTATTGGACTCATCAGTGCCCTCGTGCTGTTGCTGTTGGTACTGCTCATCCTGTGTTTCATAAAACGAAGCAAAGGTGGAAAATACTCAGTTAAAGAAAAGGAAGAAGGCCAAATAGATTCTGAAGCTCGGCCAATGAATAATGAAGCTTTTGGAGAGTACAGATCGCTAGAGAGTGACAATGAGGAGAAGCGTACAGCCAGTCAGCCGTCTCTGTGCGAGGACAGTAAGCTATGTACCGACGATGGTCTAGACGACTACGCCAACAGCAACAGCGTGCAGACCGAGGTCATCATGGACGAGTCGCTGGCCAGTCAAAGCAGCGGAGTGCGAGATGTTCCTGATGCCGAGACTCAGGAAAGTTCCCCTCTAAATCCTGCCACAGCCATCTCTCACCATGGCCTGCCCAACTCCGCCGCCCTCCTTGACTAGCCGGGCGAGCCTGAGACCAAACGTGGATTCACACATGTGCCCACCTATTGCAACCGCTCATGTCTGACCAAATCTTCAAAAACCCACAATAACGAGACCTGCACACACAACAGAT

Function

symbol description
l1cama Predicted to enable axon guidance receptor activity. Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules; positive regulation of axon extension; and synapse organization. Predicted to act upstream of or within cell adhesion; cell differentiation; and nervous system development. Predicted to be located in axonal growth cone. Predicted to be active in axon; neuronal cell body; and plasma membrane. Is expressed in gut; nervous system; presumptive enteric nervous system; and solid lens vesicle. Human ortholog(s) of this gene implicated in MASA syndrome; hydrocephalus; ovarian carcinoma; pancreatic cancer; and schizophrenia. Orthologous to human L1CAM (L1 cell adhesion molecule).

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0045773 positive regulation of axon extension biological_process
GO:0007275 multicellular organism development biological_process
GO:0007399 nervous system development biological_process
GO:0050808 synapse organization biological_process
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0042995 cell projection cellular_component
GO:0030424 axon cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0005886 plasma membrane cellular_component
GO:0044295 axonal growth cone cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008046 axon guidance receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-10 Predicted to enable axon guidance receptor activity. Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules; positive regulation of axon extension; and synapse organization. Predicted to act upstream of or within cell adhesion; cell differentiation; and nervous system development. Predicted to be located in axonal growth cone. Predicted to be active in axon; neuronal cell body; and plasma membrane. Is expressed in gut; nervous system; presumptive enteric nervous system; and solid lens vesicle. Human ortholog(s) of this gene implicated in MASA syndrome; hydrocephalus; ovarian carcinoma; pancreatic cancer; and schizophrenia. Orthologous to human L1CAM (L1 cell adhesion molecule).

Ensembl:

ensembl_id ENSDARG00000007149

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043160 False 4119 mRNA 0.51 29 28582865 28681775
TCONS_00043162 True 3970 mRNA 0.51 28 28648864 28681775

Neighbor

gene id symbol gene type direction distance location
XLOC_021746 huwe1 coding upstream 13887 28494189 ~ 28568978 (+)
XLOC_021748 dre-let-7h coding upstream 46087 28536665 ~ 28536778 (+)
XLOC_021747 dre-let-7g-2 coding upstream 46408 28536361 ~ 28536457 (+)
XLOC_021745 NA coding upstream 162281 28390669 ~ 28420584 (+)
XLOC_021744 zgc:153867 coding upstream 194352 28374458 ~ 28388513 (+)
XLOC_021751 smc1a coding downstream 11503 28693278 ~ 28713982 (+)
XLOC_021752 srm coding downstream 37088 28718863 ~ 28727106 (+)
XLOC_021753 cort coding downstream 49604 28731379 ~ 28732313 (+)
XLOC_021754 masp2 coding downstream 88450 28770225 ~ 28796157 (+)
XLOC_021755 CR381533.1 coding downstream 115651 28797426 ~ 28797548 (+)
XLOC_021742 NA non-coding upstream 305435 28139759 ~ 28277430 (+)
XLOC_021738 NA non-coding upstream 710160 27870739 ~ 27872705 (+)
XLOC_021756 CR381533.2 non-coding downstream 118328 28800103 ~ 28800219 (+)
XLOC_021758 NA non-coding downstream 214000 28895775 ~ 28896080 (+)
XLOC_021759 CR677513.1 non-coding downstream 221555 28903330 ~ 28903456 (+)
XLOC_021760 CR677513.2 non-coding downstream 244148 28925923 ~ 28926040 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_11182552_11204143 NADL1.2 coding CI01000001 null 11182552 ~ 11204499 (+)