XLOC_021752 (srm)


Basic Information

Item Value
gene id XLOC_021752
gene name srm
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 28718863 ~ 28727106 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043164
CGGTTGCCCCGCAAAGAACGCCCAACGTGTCAGTCGGCGCTCAAGATCTCCAGTAACTCTCCTTGCAGTGAAGTAGTTTGACCAGACAATTTAAACCCACCGCCGCACTGATTTAAACCCCTGGCAATGGACAATATCAAAGACGGCTGGTTCACCGAGACGTGCACGTTATGGCCCGGCCAAGCCATGAGTCTTCAAGTGGAGGAAGTGTTGTATCATAAAAAGTCGAAGTTCCAGGATGTGATGGTTTTTAAAAGTAAAACGTATGGAAATGTGCTGATTTTGGACGGGGTCATCCAATGCACAGAACGAGATGAGTTTTCTTATCAAGAAATGATCGCCAATCTACCTCTCTGCTGCCACCCTTGCCCAAAAAAGGTTCTCATCATAGGTGGAGGAGACGGTGGTGTCCTAAGAGAGGTGGTCAAGCATCCTCTGGTGGAGTCTGTAGTTCAGTGTGAGATTGATGAgGATGTAATAAATGTCTCCAAGAAATACCTTCCCGGAATGGCGAAAGGCTTCTTCAGCCCCAAGCTAACTCTGCATGTGGGTGATGGCTTTGAATTCATGAAGAAAAATCAGGATGCGTTTGACATCATCATCACAGACTCCTCAGACCCTGTCGGACCGGCTGAAAGCTTGTTCAAAGAGTCTTACTATCAGCTCATGAAAACTGCACTTTGTGAAGGAGGAATTCTCTGCTGCCAAGgaGAGTGTCAGTGGCTGCATTTGGAGCTCATCAAGGAAATGCGGACCTTCTGTAAAACCCTATTTCCTGTAGTGGACTATGCATACTGCACCATTCCCACGTATCCAAGTGGACAAATCGGCTTTATGCTTTGCAGTAAAAATTCGAAAACAAATTTCCGTGAGCCACTACGAGAACTAACAAGAGATGAAATTGAGAGCATGAGCCTGAAATATTACAATCCTGAAATCCACCGTGCTGCTTTCATCCTCCCAGAATTTGCTAGAAAGGTACTAAGTGAAGCATAAAGGGCTTGATGGGTGCCATCTTGTCAACACGCTGCCTTCTGTGAAAGCAGAACAAAACCTTCACTACAGCTTTGATAGCTGCCACAGCACATCCCTCTCCAGCTAATGATTGGTCAACGGACTGCTACAAGTGCATATGCCTTCTGTGGGGAAATTCTCTGGTTCTCTGTTCCATCAGTGCTTCTGCCAAGTCTTATAAGTTATTTCGGTTTGGTCCTCCCACATCACAAATTTCTGAACTATACAAACTGACAATCAAGCATGTTGTTTGACAGATACCACGGTCTTACTTTCTCTTACTCGTGTTGAGTAATGGAGTGCAACATTTCACTACATCTGTCTTGTTTacataagttaataaataaataaaaaaccatgcaggtattttaaagggatagtttgcctaAGTATAAATAATTGCTGGTAATATACACACCCTATGGCAGTCCGAGATGTAggtgtattttattgtttttttctttcagtatAACATTAATGGTGCACATTCAGGATGGTTGGTCTTCATTGATTTCACTTGCAGTTGATGGTCACCATTATTTTAGTATAGTATCCTACATaacatgttttgtgttcaacagaagacaggtttggaaccagtgaagggtgagtaaatgttgactgAATTTTAAATCTGCAACTGAATTAAACtcgtgtgtgggtgtgtgtgtgtgtgtgttcagcaaaAATATTGATCCTTGGTGATTCATCAAATTCAATTGAACAGACATTGTCGCTttgaataaaaagaaatatatacaggCAAACCATGATTAATGCACATGCATCCTGGAAGTACATTGAGCCTCTGCAAATGGTCTAGTTTGTTTAAGGAAATCACATAATGTTTGTGCTGACACAAactcatacaataataatatttaatttacaatgaATGGTGTCTGTGTTGAATTGTTtatcaaaaacaacaaaagtttgtAAACAGGCTCCAGTGTCTGGAAGCTTGCActttaaaattacatgaaatcaCTTTGCTTCATGAGGCTTTGAATTAAGTCTATTAATTttgtaaccatttttttttaatagttatatTTCTCAATACCTCAATGTATTGCCAGGTTCTTGGGTACTCATTTTTTTTGGTCTTTCAAAATGTCAGTAGCCATCgacttaatttattaattttatgaatcaccaagcaCCATAGTTTGAGGTAAAAAacctataaaaaaatctaaatcttggTTGCTTTGAGGGTgccataaatacattttcatttttggataaagTATCCCTTTAAATATCTGCATATGCTCTCTTTGAACACTCAGAGACTTTTAGGTCAGTAATAATTGCAGTTAAACAACAGtaaattattgtcatttaaaaggAGATAATATAGTACTGTTACCTTTACAAAAGTTGCTTACTGCAACTAACTAAAGTGGTAATATTTTCTGCAACTAATATTTTCTCCCATATAAATGCTTCGTGTTTTCCTTCTTAGCAAGTGAAGGTGACATGTGGGTCCTCTGTGTGTGATTTGTGTGGTCTGGTTTTCCAAAAAAAATTCTGATTACAAGAACTGTATAGTGCAAATAGGTGTTTGGTTAAGATGAAGATTGATATGATATAGTGTATTTCAAATGTATGCTTCTGTGGGATCTGTATGATGGAATGACTTTGAGGTGTCTTTTAACATTAGAATTACTGGAAGTCTCAAACATTGAGGCATATTATTGAACAATTATTGTGAAATATTTCAGGGCAAAACAATTAATGGTGTATTTTGTGGGATAGCTGAAGATGATCATACCTTTTTAGGGCTATAGTTGCTAAGGACAAACTATTTTGTAGTGACAGGTTTTACTATGTGGAAGGGTTTGTCTGTCCTTTTACCGTTTCATGATTATGATGtacatttcttttttcaaatttcataaattgtttttgaaataataaaacacGTGCAACCTTATtc

Function

symbol description
srm Predicted to enable spermidine synthase activity. Acts upstream of or within spermidine biosynthetic process. Is expressed in forebrain; immature eye; optic tectum; and tail bud. Orthologous to human SRM (spermidine synthase).

GO:

id name namespace
GO:0006595 polyamine metabolic process biological_process
GO:0006596 polyamine biosynthetic process biological_process
GO:0008295 spermidine biosynthetic process biological_process
GO:0005575 cellular_component cellular_component
GO:0004766 spermidine synthase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00270 Cysteine and methionine metabolism
ko00330 Arginine and proline metabolism
ko00480 Glutathione metabolism

ZFIN:

id description
ZDB-GENE-040426-1183 Predicted to enable spermidine synthase activity. Acts upstream of or within spermidine biosynthetic process. Is expressed in forebrain; immature eye; optic tectum; and tail bud. Orthologous to human SRM (spermidine synthase).

Ensembl:

ensembl_id ENSDARG00000055760

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043164 True 2959 mRNA 0.38 8 28718863 28727106

Neighbor

gene id symbol gene type direction distance location
XLOC_021751 smc1a coding upstream 4881 28693278 ~ 28713982 (+)
XLOC_021749 l1cama coding upstream 37088 28582865 ~ 28681775 (+)
XLOC_021750 BX664745.1 coding upstream 103921 28614827 ~ 28614942 (+)
XLOC_021746 huwe1 coding upstream 149885 28494189 ~ 28568978 (+)
XLOC_021748 dre-let-7h coding upstream 182085 28536665 ~ 28536778 (+)
XLOC_021753 cort coding downstream 4273 28731379 ~ 28732313 (+)
XLOC_021754 masp2 coding downstream 43119 28770225 ~ 28796157 (+)
XLOC_021755 CR381533.1 coding downstream 70320 28797426 ~ 28797548 (+)
XLOC_021756 CR381533.2 coding downstream 72997 28800103 ~ 28800219 (+)
XLOC_021757 pex14 coding downstream 81896 28809002 ~ 28925757 (+)
XLOC_021747 dre-let-7g-2 non-coding upstream 182406 28536361 ~ 28536457 (+)
XLOC_021745 NA non-coding upstream 298279 28390669 ~ 28420584 (+)
XLOC_021742 NA non-coding upstream 441433 28139759 ~ 28277430 (+)
XLOC_021758 NA non-coding downstream 168669 28895775 ~ 28896080 (+)
XLOC_021759 CR677513.1 non-coding downstream 176224 28903330 ~ 28903456 (+)
XLOC_021760 CR677513.2 non-coding downstream 198817 28925923 ~ 28926040 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_11232168_11238289 SRM coding CI01000001 null 11232168 ~ 11238655 (+)