CI01000001_11232168_11238289 (SRM)


Basic Information

Item Value
gene id CI01000001_11232168_11238289
gene name SRM
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11232168 ~ 11238655 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_11232168_11238289.mRNA
ATGGACAACATTAAAGACGGGTGGTTCACCGAAACATGCACATTATGGCCTGGCCAAGCCATGAGTCTTGAAGTGGAGGAAGTGTTATATCATAAAAAATCCAAGTTCCAGGACGTGATGGTTTTTAAAAGTAAGACATATGGAAATGTGCTGGTTTTGGATGGGGTCATCCAATGCACTGAACGAGATGAATTTTCCTATCAAGAAATGATCGCCAATCTACCTCTGTGCTGCCACCCTTGCCCAAAGAAGGTTCTCATCATCGGTGGAGGAGACGGTGGCGTCCTGAGGGAGGTTGTCAAGCATCCGCTGGTGGAGTCTGTTGTTCAGTGTGAAATTGATGAGGATGTAATAAACGTCTCCAAGAAGTACCTCCCTGGAATGGCAAAAGGCTTCTTCAGCCCCAAACTCACTCTGCATGTAGGCGATGGCTTTGAATTTATGAAAAAGAATCAGGATGCCTTTGACATCATCATCACAGACTCCTCAGACCCTGTCGGAGAGTGTCAGTGGTTGCATTTGGAGCTAATCAAGGAAATGCGGACCTTCTGTAAGACCCTCTTTCCTGTAGTGGACTATGCATACTGCACCATTCCAACATATCCAAGTGGACAAATCGGCTTCATGCTTTGCAGTAAAAATCCGAAAACAAATTTCCGTGAGCCATTGCGAGAACTAACGAGAGATGAGATTGAGAGCATGAGCCTGAAATATTACAATCCTGAAATCCACCGCGCTGCTTTCATCCTCCCAGAATTTGCCAGAAAGCCTGCAAAGGTGGCATATGGGGTCTCTGTGGGTGACTTGTGTGTTCTGGCTCTCATGAATAATCCTGACTACATGATGTGATTTGTGTAGAGCAAATCAGTGTTTGGTATGCAGCCTTTTTGAGTGATATGCTATAGTGTATTGCAAACATGCTTATGGTCAGTGGACTCTACTATGATGGAACGATTTTGAGGTGTCTTTTAACCTTACAAATACTGGAAGTCTCAAACAATGAGACGTCTTAATATCGAACATAATTATGGAGATGTACTTCAGGACAAAATAATGAACAGTGTGTTTATTGGATAGCTGAAGATGATCATGTGTCTTTTAAGGCTAGTTGCATAGGACAAACTATTTTGTACTCTGTCAAGTTTTACTGTGTGGAAGGGTTTATCTGTACTTTTACCATTTCATGATGTAAATTTCATAAATAGTTTTGAAATA

Function

symbol description
srm Predicted to enable spermidine synthase activity. Acts upstream of or within spermidine biosynthetic process. Is expressed in forebrain; immature eye; optic tectum; and tail bud. Orthologous to human SRM (spermidine synthase).

GO:

id name namespace
GO:0006595 polyamine metabolic process biological_process

KEGG:

id description
K00797 speE, SRM, SPE3; spermidine synthase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_11232168_11238289.mRNA True 1215 mRNA 0.42 7 11232168 11238655

Neighbor

gene id symbol gene type direction distance location
CI01000001_11216246_11230227 SMC1A, SMC1A.L, SMC1AB, SMC1AL coding upstream 1847 11216246 ~ 11230321 (+)
CI01000001_11182552_11204143 NADL1.2 coding upstream 27669 11182552 ~ 11204499 (+)
CI01000001_11138617_11139541 NA coding upstream 92495 11138285 ~ 11139673 (+)
CI01000001_11099313_11137500 HUWE1 coding upstream 93890 11099313 ~ 11138278 (+)
CI01000001_11019871_11028065 MYL6, MYL6B coding upstream 203644 11019479 ~ 11028524 (+)
CI01000001_11246797_11247315 CORT, SST3 coding downstream 7994 11246649 ~ 11247541 (+)
CI01000001_11265638_11283027 MASP2 coding downstream 26983 11265638 ~ 11283236 (+)
CI01000001_11359106_11376288 NA coding downstream 120451 11359106 ~ 11376885 (+)
CI01000001_11431153_11431434 NA coding downstream 191221 11429876 ~ 11431587 (+)
CI01000001_11440491_11445508 NA coding downstream 201324 11439979 ~ 11445540 (+)
G19226 NA non-coding upstream 48398 11169293 ~ 11183770 (+)
G19121 NA non-coding upstream 106009 11070904 ~ 11126159 (+)
G19130 NA non-coding upstream 245702 10925528 ~ 10986466 (+)
G19034 NA non-coding upstream 335263 10892437 ~ 10896905 (+)
G19088 NA non-coding upstream 357297 10874670 ~ 10874871 (+)
G19096 NA non-coding downstream 16414 11255069 ~ 11304024 (+)
G19108 NA non-coding downstream 142919 11381574 ~ 11381987 (+)
G19258 NA non-coding downstream 148988 11387643 ~ 11387959 (+)
G19259 NA non-coding downstream 150900 11389555 ~ 11389858 (+)
G19266 NA non-coding downstream 189449 11428104 ~ 11493856 (+)
G19039 NA other upstream 378185 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 692322 10538388 ~ 10539846 (+)
G18937 NA other upstream 755779 10474984 ~ 10476389 (+)
CI01000001_10395420_10396473 NA other upstream 835463 10394851 ~ 10396705 (+)
G18872 NA other upstream 950799 10271146 ~ 10281369 (+)
G19314 NA other downstream 262539 11501194 ~ 11558673 (+)
G19395 NA other downstream 442667 11681322 ~ 11681817 (+)
CI01000001_13514115_13517063 NA other downstream 2274749 13514115 ~ 13517063 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021752 srm coding NC_007134.7 CM002907.2 28718863 ~ 28727106 (+)