Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_021743 |
| gene name | birc5b |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 28322986 ~ 28325846 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| birc5b | Predicted to enable cysteine-type endopeptidase inhibitor activity involved in apoptotic process. Acts upstream of or within several processes, including circulatory system development; nuclear division; and regulation of apoptotic process. Predicted to be active in cytoplasm; nucleus; and spindle microtubule. Is expressed in several structures, including axial blood vessel; caudal vein plexus; intermediate cell mass of mesoderm; nervous system; and unfertilized egg. Human ortholog(s) of this gene implicated in prostate cancer and transitional cell carcinoma. Orthologous to human BIRC5 (baculoviral IAP repeat containing 5) and BIRC7 (baculoviral IAP repeat containing 7). |
| id | name | namespace |
|---|---|---|
| GO:0030953 | astral microtubule organization | biological_process |
| GO:0007507 | heart development | biological_process |
| GO:0045766 | positive regulation of angiogenesis | biological_process |
| GO:0045132 | meiotic chromosome segregation | biological_process |
| GO:0090307 | mitotic spindle assembly | biological_process |
| GO:0030182 | neuron differentiation | biological_process |
| GO:0043066 | negative regulation of apoptotic process | biological_process |
| GO:0001570 | vasculogenesis | biological_process |
| GO:0007058 | spindle assembly involved in female meiosis II | biological_process |
| GO:0043154 | negative regulation of cysteine-type endopeptidase activity involved in apoptotic process | biological_process |
| GO:0007080 | mitotic metaphase plate congression | biological_process |
| GO:0051311 | meiotic metaphase plate congression | biological_process |
| GO:0022008 | neurogenesis | biological_process |
| GO:0043523 | regulation of neuron apoptotic process | biological_process |
| GO:0005876 | spindle microtubule | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0043027 | cysteine-type endopeptidase inhibitor activity involved in apoptotic process | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030826-2 | Predicted to enable cysteine-type endopeptidase inhibitor activity involved in apoptotic process. Acts upstream of or within several processes, including circulatory system development; nuclear division; and regulation of apoptotic process. Predicted to be active in cytoplasm; nucleus; and spindle microtubule. Is expressed in several structures, including axial blood vessel; caudal vein plexus; intermediate cell mass of mesoderm; nervous system; and unfertilized egg. Human ortholog(s) of this gene implicated in prostate cancer and transitional cell carcinoma. Orthologous to human BIRC5 (baculoviral IAP repeat containing 5) and BIRC7 (baculoviral IAP repeat containing 7). |
| ensembl_id | ENSDARG00000055655 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00043141 | False | 598 | mRNA | 0.42 | 4 | 28322986 | 28325846 |
| TCONS_00043142 | False | 612 | processed_transcript | 0.43 | 4 | 28323080 | 28325841 |
| TCONS_00043143 | True | 525 | lncRNA | 0.39 | 3 | 28323089 | 28325053 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_021742 | NA | coding | upstream | 45556 | 28139759 ~ 28277430 (+) |
| XLOC_021741 | c1galt1a | coding | upstream | 186247 | 28092083 ~ 28136739 (+) |
| XLOC_021740 | slc26a10 | coding | upstream | 231877 | 28077953 ~ 28091109 (+) |
| XLOC_021739 | NA | coding | upstream | 315679 | 27912079 ~ 28007307 (+) |
| XLOC_021738 | NA | coding | upstream | 450281 | 27870739 ~ 27872705 (+) |
| XLOC_021744 | zgc:153867 | coding | downstream | 48612 | 28374458 ~ 28388513 (+) |
| XLOC_021745 | NA | coding | downstream | 64823 | 28390669 ~ 28420584 (+) |
| XLOC_021746 | huwe1 | coding | downstream | 168343 | 28494189 ~ 28568978 (+) |
| XLOC_021747 | dre-let-7g-2 | coding | downstream | 210515 | 28536361 ~ 28536457 (+) |
| XLOC_021748 | dre-let-7h | coding | downstream | 210819 | 28536665 ~ 28536778 (+) |
| XLOC_021731 | NA | non-coding | upstream | 806713 | 27508867 ~ 27516273 (+) |
| XLOC_021724 | CT573349.1 | non-coding | upstream | 1394128 | 26928743 ~ 26928858 (+) |
| XLOC_021722 | NA | non-coding | upstream | 1697853 | 26591124 ~ 26625133 (+) |
| XLOC_021750 | BX664745.1 | non-coding | downstream | 288981 | 28614827 ~ 28614942 (+) |
| XLOC_021755 | CR381533.1 | non-coding | downstream | 471580 | 28797426 ~ 28797548 (+) |
