XLOC_021740 (slc26a10)


Basic Information

Item Value
gene id XLOC_021740
gene name slc26a10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 28077953 ~ 28091109 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043133
ATGAGCGCGTCGGTGGCTATTTACAGAAACATATACACTGAGGATCGGTTCCGACAGACGTACGGTACGGAAGACCAGTCTGGCGGGAGAGAGCGGCTCCGGGACCGGCTGGCGCAGAGATGCAGCTGCTCGCAGGTGGAGTGCGTTCACCTGCTTCACAAGAGACTGCCCGTGTGCAGCTGGCTGCCAAAGTACAAGCTCAGAAAATGGCTCTTAGGAGATATCATAGCCGGACTGACTGTTGGAATAGTACACATTCCCCaagGGATGGCGTTTGCTTTGTTGACATCAGTGGCTCCTGTCTATGGGCTTTACACATCTTTTTTCCCAGTGGTCCTTTATATGCTTTTTGGCACTGGTCATCATGTTTCCACAGGTACCTTTGCTGTGTTGAGTCTGATGACTGGCTCAGTTGTGGAGCAGCTGGTCCCCATCCCACTCGCACTGAATAGCAGTAGCCCAGAGGCTGCAGAGTTTGAGGCCCAGAGGATTGGAGTGGCATCAGCCGTAGCCTTTCTCTCAGGCATAATGATGCTCTGTATGTGTGGACTCCAGTTGGGTTTCCTTTCTACATATCTCTCAGAACCAATTGTTAAGGCGTTCACAAGTGCAGCCGCCTTCCACGTGACTGTCTCACAGCTGCAAAGCATGTTGGGATTACGGTTACCCCGATATGCTGGTGCCTTTTCTctttttaagACGTTGGCTTCAGTGATGGAAAACGTGCCCCACACTAATTTGGCTGAGCTGGTGATCTCACTGCTCTGCCTGGCTGTTCTGGTGCCTGTTAAAGAGGTCAATTCCCGCTTTCGGGAGCGTCTGCGGACTCCAATCCCTGTGGAGATTATCACTGTGAACGGTTTAGAAAGCACGTGGATGAAATGTTTACTAATTTTCAGTTTTCCAGAACCACGACTGCCTGCATTAGAGACAGTTCCAGAAATTGCTGGTGACACAGTAGCTATCACACTCGTCGCCTATGCTGTGTCTGTATCTCTAGCCATGATATATGCTGATAAGCATGGATACTCCATCGATCCAAATCAGGAGCTTCTAGCACATGGGATCTCCAACACTGTGTCATCTCTGTTCACTTGCTTCCCCAATTCAGCTACACTGGCCACTACAAACATACTAGAGAGTGCTGGAGGTCACACGCAGCTTGCAGGACTATTCACAAGTCTGGTTGTTCTTATTGTACTTCTGCTGATAGGACCTCTGTTTTACTTTTTACCCAAGGCAGTGCTGGCTTGTATAAATGTGACCAGCCTGAGACAGATGTTCCTACAGTTTCAGGATCTCCCTGAACTATGGAGAATTAGCAAAATTGATTTTATGGTGTGGCTTGTGACCTGGCTGTCTGTAGTTGTGCTGAATGTAGACCTGGGGTTGGCCATTGGGATggtcttttccatgatgacagtcgTCTGTCGCACACAGAGGGCCAGCTGCTCTGTGTTAGGAAGAGCTGCCAACACAGAGATCTACAGATCCATCAACAACCATAATAAATGCTATGAAGTGCCCGGTGTGAAGATCCTGACCTACAATGGGCCCATCTATTATGGCAACCGTAGCTTTTTCAAGGCGGATATGGCTCAGCTACTGGGACTCACCCCTGAGAGGATACGCAGTCGAGAAAAAGCCCTGAAGGCTATtgagaagagagaaagagaggccaTTAGCACTGTAGAGCAAGGAGTTGCAGACAGTTCATTTTCTTCAAAGAATGACTTGTTCACATCAGGTGAAGTCCAGGCTGTGCTGATAGACTGCAGCAGCGTCATTTTTGTGGATATTGCAGGAGCTCGGTTATTCATACAAATGTGCATGGAGTGCCAGAAGATTGGGGTACGGATATACCTGGCTAACTGCAATGAGAGCGTACTAAAGATTCTCACATCCAGCGGGCTGATGAACTACATGAATCCTCAGCATATCTTTGTAACAATCCATGATGCCGTGGTCTACATCCAACAGCAGAGAGAGAAACCTCCAGAGACCAACACAATGGTGTGGGTGTGA
>TCONS_00043134
ATGAGCGCGTCGGTGGCTATTTACAGAAACATATACACTGAGGATCGGTTCCGACAGACGTACGGTACGGAAGACCAGTCTGGCGGGAGAGAGCGGCTCCGGGACCGGCTGGCGCAGAGATGCAGCTGCTCGCAGGTGGAGTGCGTTCACCTGCTTCACAAGAGACTGCCCGTGTGCAGCTGGCTGCCAAAGTACAAGCTCAGAAAATGGCTCTTAGGAGATATCATAGCCGGACTGACTGTTGGAATAGTACACATTCCCCaagGGATGGCGTTTGCTTTGTTGACATCAGTGGCTCCTGTCTATGGGCTTTACACATCTTTTTTCCCAGTGGTCCTTTATATGCTTTTTGGCACTGGTCATCATGTTTCCACAGGTACCTTTGCTGTGTTGAGTCTGATGACTGGCTCAGTTGTGGAGCAGCTGGTCCCCATCCCACTCGCACTGAATAGCAGTAGCCCAGAGGCTGCAGAGTTTGAGGCCCAGAGGATTGGAGTGGCATCAGCCGTAGCCTTTCTCTCAGGCATAATGATGCTCTGTATGTGTGGACTCCAGTTGGGTTTCCTTTCTACATATCTCTCAGAACCAATTGTTAAGGCGTTCACAAGTGCAGCCGCCTTCCACGTGACTGTCTCACAGCTGCAAAGCATGTTGGGATTACGGTTACCCCGATATGCTGGTGCCTTTTCTctttttaagACGTTGGCTTCAGTGATGGAAAACGTGCCCCACACTAATTTGGCTGAGCTGGTGATCTCACTGCTCTGCCTGGCTGTTCTGGTGCCTGTTAAAGAGGTCAATTCCCGCTTTCGGGAGCGTCTGCGGACTCCAATCCCTGTGGAGATTATCACTGTAATAATTGCAACAGGAATCACATATGCCTTTTCTCTGGATTCCAAGTATGACATACAGATTGTAGGACATATTCCTGCAGGTTTTCCAGAACCACGACTGCCTGCATTAGAGACAGTTCCAGAAATTGCTGGTGACACAGTAGCTATCACACTCGTCGCCTATGCTGTGTCTGTATCTCTAGCCATGATATATGCTGATAAGCATGGATACTCCATCGATCCAAATCAGGAGCTTCTAGCACATGGGATCTCCAACACTGTGTCATCTCTGTTCACTTGCTTCCCCAATTCAGCTACACTGGCCACTACAAACATACTAGAGAGTGCTGGAGGTCACACGCAGCTTGCAGGACTATTCACAAGTCTGGTTGTTCTTATTGTACTTCTGCTGATAGGACCTCTGTTTTACTTTTTACCCAAGGCAGTGCTGGCTTGTATAAATGTGACCAGCCTGAGACAGATGTTCCTACAGTTTCAGGATCTCCCTGAACTATGGAGAATTAGCAAAATTGATTTTATGGTGTGGCTTGTGACCTGGCTGTCTGTAGTTGTGCTGAATGTAGACCTGGGGTTGGCCATTGGGATggtcttttccatgatgacagtcgTCTGTCGCACACAGAGGGCCAGCTGCTCTGTGTTAGGAAGAGCTGCCAACACAGAGATCTACAGATCCATCAACAACCATAATAAATGCTATGAAGTGCCCGGTGTGAAGATCCTGACCTACAATGGGCCCATCTATTATGGCAACCGTAGCTTTTTCAAGGCGGATATGGCTCAGCTACTGGGACTCACCCCTGAGAGGATACGCAGTCGAGAAAAAGCCCTGAAGGCTATtgagaagagagaaagagaggccaTTAGCACTGTAGAGCAAGGAGTTGCAGACAGTTCATTTTCTTCAAAGAATGACTTGTTCACATCAGAGATGGCTGAAGGTGAAGTCCAGGCTGTGCTGATAGACTGCAGCAGCGTCATTTTTGTGGATATTGCAGGAGCTCGGTTATTCATACAAATGTGCATGGAGTGCCAGAAGATTGGGGTACGGATATACCTGGCTAACTGCAATGAGAGCGTACTAAAGATTCTCACATCCAGCGGGCTGATGAACTACATGAATCCTCAGCATATCTTTGTAACAATCCATGATGCCGTGGTCTACATCCAACAGCAGAGAGAGAAACCTCCAGAGACCAACACAATGGTGTGGGTGTGATTTATTTGAAACAACCATAATTCAAGATTTATTTGGACTGAGACTCGAAGCAGGAACTGAAGAACCAGCGTTTGACTGCAAGTGTGTCAGAAGGACGTGCACTTAAAGTCAATGCAACATTTATTTTGCCTCTATATGCCGTGATGAGTTTGTCAGGGCACATTATGGTGTCAAACAGAAGTATAGAGCTGCAGTGGCTAAATTATTTTCACACCATGACAAAT

Function

symbol description
slc26a10 Predicted to enable anion transmembrane transporter activity. Predicted to act upstream of or within sulfate transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in basolateral plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in otic placode and otic vesicle. Orthologous to human SLC26A10 (solute carrier family 26 member 10).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0008272 sulfate transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016323 basolateral plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0019531 oxalate transmembrane transporter activity molecular_function
GO:0015301 anion molecular_function
GO:0008271 secondary active sulfate transmembrane transporter activity molecular_function
GO:0015106 bicarbonate transmembrane transporter activity molecular_function
GO:0015108 chloride transmembrane transporter activity molecular_function
GO:0015116 sulfate transmembrane transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-030131-9845 Predicted to enable anion transmembrane transporter activity. Predicted to act upstream of or within sulfate transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in basolateral plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in otic placode and otic vesicle. Orthologous to human SLC26A10 (solute carrier family 26 member 10).

Ensembl:

ensembl_id ENSDARG00000078800

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043133 False 2025 mRNA 0.49 18 28077953 28090885
TCONS_00043134 True 2297 mRNA 0.48 18 28077953 28091109

Neighbor

gene id symbol gene type direction distance location
XLOC_021739 NA coding upstream 70646 27912079 ~ 28007307 (+)
XLOC_021738 NA coding upstream 205248 27870739 ~ 27872705 (+)
XLOC_021737 kmt2d coding upstream 284076 27778670 ~ 27793877 (+)
XLOC_021736 kmt2d coding upstream 308960 27756984 ~ 27768993 (+)
XLOC_021735 dhh coding upstream 328891 27740592 ~ 27749062 (+)
XLOC_021741 c1galt1a coding downstream 974 28092083 ~ 28136739 (+)
XLOC_021742 NA coding downstream 48650 28139759 ~ 28277430 (+)
XLOC_021743 birc5b coding downstream 231877 28322986 ~ 28325846 (+)
XLOC_021744 zgc:153867 coding downstream 283349 28374458 ~ 28388513 (+)
XLOC_021745 NA coding downstream 299560 28390669 ~ 28420584 (+)
XLOC_021731 NA non-coding upstream 561680 27508867 ~ 27516273 (+)
XLOC_021724 CT573349.1 non-coding upstream 1149095 26928743 ~ 26928858 (+)
XLOC_021722 NA non-coding upstream 1452820 26591124 ~ 26625133 (+)
XLOC_021714 AL845287.1 non-coding upstream 2082812 25995027 ~ 25995141 (+)
XLOC_021747 dre-let-7g-2 non-coding downstream 445252 28536361 ~ 28536457 (+)
XLOC_021748 dre-let-7h non-coding downstream 445556 28536665 ~ 28536778 (+)
XLOC_021750 BX664745.1 non-coding downstream 523718 28614827 ~ 28614942 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_10807407_10818870 SLC26A10 coding CI01000001 null 10807320 ~ 10820053 (+)