XLOC_021739


Basic Information

Item Value
gene id XLOC_021739
gene name NA
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 27912079 ~ 28007307 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043132
ATGAAGGGGGGCCACCATCATCGGGGCTGCGCCTGCCCCCACTTGTTTCGGAAAGTCTTGGCAAAGTGCGGCTGCTGTTATGCCCGGGTCAGAGACTCATACTCAGCCGCTGGCAGTGAGGGCAGTATCTCCACCTCGGTGGCCTCTCTGCCGCCCCAGGCTTCGGGCAGTTCGGCCCCAAACTCCCCAGGCTCCCGTCGCTCTGTCAGCACCCTGAAGAAGTGGCTGACAAATCCGGTGCGTAAGCTTAGCGCTGGGGCAGCAGGAAGTGCCAAAGGGGAGCGGCAGTTCATCATGTTCTGTTTCACGCAGGGCTACATGGCTACTATGAATGTGAAAGGAATTCCAGAAGACATGAAGGGAAAAGACAAAATAGTGTTCGGGAATATTCATCAGATCTACGACTGGCATAAAGATTATTTCCTGGCCGAGCTGGAGAAATGTGTGGCCGAGCCTAAACGACTGGCGCAACTTTTTATCAAACATGAAAGACGGCTTCACATGTATGTGGTGTATTGCCAGAACAAACCTAAATCTGAGCACATCGTGTCAGAATACATCGAGACCTACTTTGAGgagCTGAAACAGCAGCTGGGTCACAGACTGCAGCTCAATGACCTGCTCATCAAACCAGTGCAGAGGATCATGAAGTACCAGCTGCTGCTGAAGGACTTCCACAAGTACTACACAAAGGCTGGGATGGACACTGAAGAGCTGGAGAAAGCAGTGGAGGTGATGTGTTTTGTTCCGAAGCGCTGCAATGACATGATGAACGTGGGTCGGCTGCAGGGCTTTGAGGGGAAGATCACGGCACAAGGAAAACTTCTCCAGCAAGACACATTCACAATCACCGAGCAGGACAGCAGCATCCTGTCCCGCGCTAAAGAGAGACGGGTCTTCCTGTTTGAACAACTTGTCATCTTTAGCGAGCCAATCGACAGGAAGAAAGGATTTTCTCTACCtggttacatttttaagaacagtaTTAAGATAAGTTGTTTGGGTGTGGAGGCTTGTGTAGATGGTGACCCAAATCGCTTTGCCCTGACGTCCCGGGGGGCCGATGGTAGCACAGTGCGATATGTTTTGTACTCCTCATCGCCGAATATCTGCATGGCTTGGGTCAGTGACGTGAGCCAAATACTGGAGACCCAACGCAATTTCCTTAATGCCCTGCAGTCGCCTATAGAGTACCAGAGAAGGGAGAGCAAGAGCAACAGTTTGGGCCGCAGCATAAAGCCTCCTCTGTCAGCAGTGGCTGGTCTGAGGCCTCACTCCTCAGCGTCCATCGACCGACATAAACTGCCCTGTCTGCGCTCCTGTAACACATCATTGCCCTCTCTATATCTGCCCAGCCAGGTCCCCACTGACGACCACTCACAGCCAGAGGTGGGACATTTCAGTTGTCTGAGGTTTGCTTTAACCTCACAAACCCCTTATTTGTTGTCTCCAACTCATGTGCAGCTGGCCTTCTCTGAAGAGCCATCTTTCTCCCAGGCACCACTAAACTGCCAAGCGGTCTCCAACGGGCTCACACAAGGCTCACAGGTACTGATCAAACCCTCTTTAACACCatcatttagaaatgaaatgtTCAGAATGAAACCAGAGTTTTGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000100606

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043132 True 1617 mRNA 0.51 13 27912079 28007307

Neighbor

gene id symbol gene type direction distance location
XLOC_021738 NA coding upstream 39374 27870739 ~ 27872705 (+)
XLOC_021737 kmt2d coding upstream 118202 27778670 ~ 27793877 (+)
XLOC_021736 kmt2d coding upstream 143086 27756984 ~ 27768993 (+)
XLOC_021735 dhh coding upstream 163017 27740592 ~ 27749062 (+)
XLOC_021734 lmbr1l coding upstream 184567 27703749 ~ 27727512 (+)
XLOC_021740 slc26a10 coding downstream 70646 28077953 ~ 28091109 (+)
XLOC_021741 c1galt1a coding downstream 84776 28092083 ~ 28136739 (+)
XLOC_021742 NA coding downstream 132452 28139759 ~ 28277430 (+)
XLOC_021743 birc5b coding downstream 315679 28322986 ~ 28325846 (+)
XLOC_021744 zgc:153867 coding downstream 367151 28374458 ~ 28388513 (+)
XLOC_021731 NA non-coding upstream 395806 27508867 ~ 27516273 (+)
XLOC_021724 CT573349.1 non-coding upstream 983221 26928743 ~ 26928858 (+)
XLOC_021722 NA non-coding upstream 1286946 26591124 ~ 26625133 (+)
XLOC_021714 AL845287.1 non-coding upstream 1916938 25995027 ~ 25995141 (+)
XLOC_021745 NA non-coding downstream 383362 28390669 ~ 28420584 (+)
XLOC_021747 dre-let-7g-2 non-coding downstream 529054 28536361 ~ 28536457 (+)
XLOC_021748 dre-let-7h non-coding downstream 529358 28536665 ~ 28536778 (+)
XLOC_021750 BX664745.1 non-coding downstream 607520 28614827 ~ 28614942 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_10749174_10779222 ARHGEF25A coding CI01000001 null 10749174 ~ 10779454 (+)
bowfin (Amia calva) AMCG00008867 NA coding CM030126.1 CM030126.1 13517663 ~ 13534601 (+)