CI01000001_10749174_10779222 (ARHGEF25A)


Basic Information

Item Value
gene id CI01000001_10749174_10779222
gene name ARHGEF25A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10749174 ~ 10779454 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_10749174_10779222.mRNA
ACTCATACTCAGCCGCTGGCAGTGAGGGCAGTATCTCCACCTCGGTGGCCTCTCTGCCGCCCCAGGCTTCGGGTAGTTCGGCCCCAAACTCCCCTGGCTCCCGTCGCTCTGTCAGCACCCTGAAGAAGTGGCTGACCAATCCGGTGCGTAAGCTGAGCGCCGGGGCGACCGGAACGGCCAAAGGGGAGCGGCAGGTCCGCAAACTGGAGGGCAAACCCCCGCCTCCACCCACCAGGAGCAGCCAAGACCTGGGCACCCCGCAAACAACAGAGGAGCAGTTCACCATCCTGCCAGTCATTGACAAAGAGCTGGAGTGGAGAGATGGCCTGCCCGCTCTCGGCGACTGCGATCCTGGTATCCTGCAGTCCTACAGCTTCCAATCAGACTCTCCACAGGGATCCACCACACTAGGACATACACAGAAGTTGAGTGATGAAAGGAAAGCTCAGCTGACAGCCCGCTTTGTACCTGACACCGAAAGATTTGCTGTGGGGATCCATCAGGTTTTTTATTCCAACAAAAGGAGAATATGTCTATTGATGTACACTACTGCAGACACACTGCAGGGAGAACAATGGCCAGTGGTTCTTTTTGTCTTTGCAGCCATCCCCGAAGCGAATAACATTTCAGCATTATGTCTCATCTCTTATACACAGTTATCCCCTCTGTGTCTGCAGATCACCCCGTGCACCAGCCTACAGGCTGACGACAATGGCTCTGTGTTGACGGATGACAACTCCAGCCAATCATCAGCCACCATAGACAGCGAAGAGGATCGGAAGAGTGCCTTAGAAAAAAGCATGTATGTTCTGAAAGAACTGATAGAGACAGAAAAGCTGTATGTAGCTGATCTAGGACTTATTGTGGAGGGCTACATGGCCACTATGAGTACTAAAGGAATTCCAGAAGACATGAAGGGAAAAGACAAAATAGTGTTTGGGAATATTCATCAGATCTACGACTGGCATAAAGAGTGGGTTTATCTGCGATTTTATTTCCTGGGTGAGCTGGAGAAATGTGTGGCCGAGCCTGAACGACTGGCCCAACTTTTTATCAAACATGAAAGACGGCTTCACATGTATGTGGTATATTGCCAGAACAAACCTAAGTCTGAGCACATCGTGTCAGAATACATCGAGACCTACTTTGAGGAACTGAAACAGCAGCTGGGTCACAGGCTGCAGCTGAATGACCTGCTCATCAAACCCGTGCAGAGGATCATGAAGTACCAGCTGCTACTGAAGGATTTCCTCAAGTACTACACAAAGGCTGGGATGGACACTGAAGAGCTGGAGGGGAAGATCACGGCACAAGGAAAACTTCTCCAGCAAGACACGTTCACAGTCACAGAACAGGACAGCAGCTTCCTTTCCCGCGCTAAGGAGAGGCGGGTCTTCCTATTTGAACAGCTTGTTATCTTCAGTGAGCCAATAGACAGGAAAAAAGGATTTTCTCTACCTGGATATATTTTTAAAAACAGTATTAAGATAAGTTGTCTGGGCGTGGAGGCGTGTGTAGATGGTGACCCTAATCGCTTTGCCCTGACGTCTCGGGGGGCTGATGGCAGCACGGTGCGATTTGTCTTGCACTCCCCATCGCTGGACATCTGCAAGGCTTGGGTCAGTGATGTGAGCCAAATACTGGAGACCCAACGCAATTTCCTCAATGCCCTGCAGTCGCCCATTGAGTACCAGAGAAGGGAGAGCAAGAGCAACAGCTTGGGTCGTAGCATGAAGCCTCCTCTGTCAGCAGTGGTTGGTCTGAGGCCTCACTCCTCGGCATCTATCGACCGACACAAACTGCCCTGCCTGCGCTCCTGTAACACATCATTGCCCTCCCTCTACCTGCCCAGCCAGGTCCCCACTGATGACCACTCACAGCCAGAGTCAACACAAATCCAGCGCTGTCCGGTGGACTCCAGACTGAATTCCCAGACGGTGTCTCCAACTCATGTGCAGCTGGCCTTCTCTGAAGACCCATCACTCTCCCAGGCACCTCTAAATTGCCAAGCGGTCTCCAACGGACTGTGTTCCTCTAGCACGCAAGGCCCACAGAGTTCAGGAGAGGGTGGACGCAGAGTTTCACTGAGAGAGGGACGCATGGCTGCTCCTAGTCCCTCCTCCACTCTTCAGCGCTCCAGTAATTTGGCCCAACTTGATGAGGACGACCTGTGAATGGAAATGACCCTGAATCTGATGTTTGCACCAGAGCATGCCACAGTCTGGACTTTATTCACGTCTGTTATCTTGTGGTATTCTTCCTAAACCTGTGACGCGAATTACCTAGTGACTTTTTAAATTGTTTTAGATCATTTTTTTTTTGTCTTTTTACTTTTACTAAGTTGTGTTTTATTCAAAGGAGAATCAACCATTCCTATATTGGGAGGTCACTGGAGCAGGAACCAGA

Function

symbol description
arhgef25a Orthologous to human ARHGEF25 (Rho guanine nucleotide exchange factor 25).

GO: NA

KEGG:

id description
K20690 ARHGEF25; Rho guanine nucleotide exchange factor 25

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_10749174_10779222.mRNA True 2406 mRNA 0.51 17 10749174 10779454

Neighbor

gene id symbol gene type direction distance location
CI01000001_10715529_10716091 NA coding upstream 32264 10715114 ~ 10716910 (+)
CI01000001_10694664_10713151 NA coding upstream 34490 10694467 ~ 10714684 (+)
CI01000001_10688354_10691353 NA coding upstream 57765 10687862 ~ 10691409 (+)
CI01000001_10604980_10633286 KMT2D coding upstream 115634 10603888 ~ 10633540 (+)
CI01000001_10590766_10595793 DHH coding upstream 152936 10590436 ~ 10596238 (+)
CI01000001_10807407_10818870 SLC26A10 coding downstream 27866 10807320 ~ 10820053 (+)
CI01000001_10856786_10861403 C1GALT1A coding downstream 76506 10855960 ~ 10862138 (+)
CI01000001_10968536_10981345 NA coding downstream 188890 10968344 ~ 10981787 (+)
CI01000001_10989337_10992917 BIRC5B coding downstream 209883 10989337 ~ 10992978 (+)
CI01000001_11019871_11028065 MYL6, MYL6B coding downstream 240025 11019479 ~ 11028524 (+)
G18998 NA non-coding upstream 91903 10655387 ~ 10657271 (+)
G19041 NA non-coding upstream 94252 10654569 ~ 10654922 (+)
G18997 NA non-coding upstream 149923 10599026 ~ 10599251 (+)
G19008 NA non-coding upstream 150360 10598604 ~ 10598814 (+)
G19009 NA non-coding upstream 162880 10585956 ~ 10586294 (+)
G19080 NA non-coding downstream 34936 10814390 ~ 10815702 (+)
G19087 NA non-coding downstream 94528 10873982 ~ 10874233 (+)
G19088 NA non-coding downstream 95216 10874670 ~ 10874871 (+)
G19034 NA non-coding downstream 112983 10892437 ~ 10896905 (+)
G19130 NA non-coding downstream 146074 10925528 ~ 10986466 (+)
CI01000001_10538498_10539667 RPS26 other upstream 209328 10538388 ~ 10539846 (+)
G18937 NA other upstream 272785 10474984 ~ 10476389 (+)
CI01000001_10395420_10396473 NA other upstream 352469 10394851 ~ 10396705 (+)
G18872 NA other upstream 467805 10271146 ~ 10281369 (+)
G18873 NA other upstream 488460 10223879 ~ 10260714 (+)
G19039 NA other downstream 71470 10850924 ~ 10853983 (+)
G19314 NA other downstream 721740 11501194 ~ 11558673 (+)
G19395 NA other downstream 901868 11681322 ~ 11681817 (+)
CI01000001_13514115_13517063 NA other downstream 2733950 13514115 ~ 13517063 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021739 NA coding NC_007134.7 CM002907.2 27912079 ~ 28007307 (+)
bowfin (Amia calva) AMCG00008867 NA coding CM030126.1 CM030126.1 13517663 ~ 13534601 (+)