CI01000001_10590766_10595793 (DHH)


Basic Information

Item Value
gene id CI01000001_10590766_10595793
gene name DHH
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10590436 ~ 10596238 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_10590766_10595793.mRNA
ATATAAATGGATTGACCCGTGTGAGCTCCTCGAGAGCCAGAAATCTAATGCTAATTATATGGAAAGTGTTTCAGTTTTAAACACTCACCATGTCTGGATGTCGAATGCATTGATGTTAAGGTCTAAATAATCAGTTTAATCTGGAAGCCATTACACTTTGGTCAATGATTCACTAGCCTAATCCACACGAGTGCCCATTTTAATTCAGCACCGTGATATGGACATGGAAAAAGTCAGTTGTGTTCACGAAATGCCACGAGGTGCTGGGAGAGACGCTCGCGCTGCAGGGTTCGCGGCTCGCTGATCTCCTGGCACACTTCACGCGCGTCAATGACGTTGGCTCCTTGGTTAAGGCTGGCATGGCTCGGCCTGCTGACTGCGGGTCTTTATTCATGGCTGGCGGTTGACGGATGCGGGCCGGGTCCCGGTTACGGCAGTCGCCCTAGGCAACGCAAGTTGACTCCAATGTCTTATAAGCAGTACGTGCCCGGTGTCTCTGAGAACAACCTGGGAGCGAGCGGAAGAGCGGAGGGCAGGATAACGAACGGTTCGGAACGCTTCAAAAAGCTCGTGTGCAACTACAACCCTGACATTGTCTTCAAAGACGAGGAACATACCAGAGCCGACCGGCTGATGACCAAGCGCTGTAAGGACTGCCTCAATAAACTGGCAATAGCAGTAATGAATCAGTGGCCTGGGGTCCGACTGCGAGTGACAGAAGCCTGGGATGAGGACGGCCATCACCCTCCTGGTTCTTTACATTATGAGGGCCGAGCTGTTGACATCACCACCTCAGACCGGAACACAAAAAAATATGGACTACTTGCACAGTTGGCAGTTGAGGCTGGATTTGACTGGGTGCACTATGAATCCAAGTACCACGTGCACTGCTCTGTCAAAGCCGATCACTCTGTAGCCGTGGAGAAAGGTGGCTGCTTTTCAGGATCGGGACTTGTGACAATAGCCAAAAGTGTGCAAAAGCCCATTTCGAGGTTGCGGCCTGGCGAGAAGGTGCTTTCCTTGTCTGGGTCAGGTGAAATTGTTCTCAGTCGGGTACTTCTCTTTCTACATCTGGATAGAGAGAGCAGAGCCACTTTCTTTATTCTTGGCACCGAAAACGGGAAACAAATGGCACTAACACCCAATCACCTCATCTTTGCGGCTCCCAATCTCAAACTGCACCACCATGAGTATGAAGCTATTTTTGCCAAAGAAGTTAGGATTGGAGACTATATACTTACTACTGGTGACAATAGAGGAATTCAGCCATCTAAAGTGGTGTCAATTTCACTGGAGGAGAGGATGGGTGTTTTTGCTCCTTTGACAGAACATGGGAACATATTTGTGGATGGCGTGCTGGTATCCAACTACGCTTCTGTTGAGGATCACAGACTCGCACACTGGGCGTTTTGGCCAGTCCGTGTCCTGTTTGGCTTTTTCCACACAGAAATGGAAGAAAACTCACAAAGAGTGATGGTTAAAAGTAGTGCCATGGTCCCTAATATCTGTTCCACAAATCAGACGTTCCTTACAAATGTAATGCACAATACTTCTTCCAGCACATGCAGCAAATTCCAAGACGCAACAGTGGAAATGGAAAATGAACACAGTTTTTTGCAACAAAAGGAGGTTTACTGGTATGCAAGGCTTTTGCACACATTAGGGCGGATATTTCTTGACCCTCAGAAGTTTTACTGATGGTCAATACACAGAATATGCAAATATTAAATTGAAAAAACTGACCAAAAAAGGAAATGCATTAGGCGCTATAACTGGTATAATTACTCACCACATAACATCCAGTTACAATTACTTTATTAATTGAGAATATGTAAATGTGTTGCCGTTATACATATACCGTATGTGAAATATTCAGTGTAACTTTTTCAAATAATACTTGTCATATTGAATAATCACCATATGGACATTTATGGGATTTGAAATGTAAACTTGTATTTTTTATGTTTGTTTTACAAGAAAATATTTCAAAGAGTAATAAATATTTATTTTTATACATTTGAATTCATAATATATATTTCATTTAGTTCAGATTATGGCTTAAGGCCCTTTGTTATACCAAACAGACACTGATACAGTTGTTGTAATCTTATTTTTTACGTATTGTAGTTTATTGTGCTGCAAA

Function

symbol description
dhh Predicted to enable calcium ion binding activity and patched binding activity. Predicted to be involved in cell fate specification; regulation of gene expression; and smoothened signaling pathway. Predicted to act upstream of or within cell-cell signaling; intein-mediated protein splicing; and protein autoprocessing. Predicted to be located in extracellular region and plasma membrane. Predicted to be active in extracellular space. Is expressed in testis. Human ortholog(s) of this gene implicated in 46,XY sex reversal and 46,XY sex reversal 7. Orthologous to human DHH (desert hedgehog signaling molecule).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K11990 DHH; desert hedgehog

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_10590766_10595793.mRNA True 2143 mRNA 0.44 3 10590436 10596238

Neighbor

gene id symbol gene type direction distance location
CI01000001_10582439_10582802 NA coding upstream 7615 10582378 ~ 10582821 (+)
CI01000001_10573770_10582123 LMBR1L coding upstream 8198 10573770 ~ 10582238 (+)
CI01000001_10538498_10539667 RPS26 coding upstream 50734 10538388 ~ 10539846 (+)
CI01000001_10525795_10530510 WNT1 coding upstream 59893 10523262 ~ 10530543 (+)
CI01000001_10420931_10426716 NA coding upstream 163289 10420318 ~ 10427147 (+)
CI01000001_10604980_10633286 KMT2D coding downstream 7650 10603888 ~ 10633540 (+)
CI01000001_10688354_10691353 NA coding downstream 91624 10687862 ~ 10691409 (+)
CI01000001_10694664_10713151 NA coding downstream 98229 10694467 ~ 10714684 (+)
CI01000001_10715529_10716091 NA coding downstream 118876 10715114 ~ 10716910 (+)
CI01000001_10749174_10779222 ARHGEF25A coding downstream 152936 10749174 ~ 10779454 (+)
G19009 NA non-coding upstream 4142 10585956 ~ 10586294 (+)
G19030 NA non-coding upstream 36467 10553689 ~ 10553969 (+)
G19029 NA non-coding upstream 36775 10553344 ~ 10553661 (+)
G19026 NA non-coding upstream 52420 10537802 ~ 10538016 (+)
G19011 NA non-coding upstream 89621 10498633 ~ 10500815 (+)
G19008 NA non-coding downstream 2366 10598604 ~ 10598814 (+)
G18997 NA non-coding downstream 2788 10599026 ~ 10599251 (+)
G19041 NA non-coding downstream 58331 10654569 ~ 10654922 (+)
G18998 NA non-coding downstream 59149 10655387 ~ 10657271 (+)
G19080 NA non-coding downstream 218152 10814390 ~ 10815702 (+)
G18937 NA other upstream 114047 10474984 ~ 10476389 (+)
CI01000001_10395420_10396473 NA other upstream 193731 10394851 ~ 10396705 (+)
G18872 NA other upstream 309067 10271146 ~ 10281369 (+)
G18873 NA other upstream 329722 10223879 ~ 10260714 (+)
G19039 NA other downstream 254686 10850924 ~ 10853983 (+)
G19314 NA other downstream 904956 11501194 ~ 11558673 (+)
G19395 NA other downstream 1085084 11681322 ~ 11681817 (+)
CI01000001_13514115_13517063 NA other downstream 2917166 13514115 ~ 13517063 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021735 dhh coding NC_007134.7 CM002907.2 27740592 ~ 27749062 (+)