CI01000001_10856786_10861403 (C1GALT1A)


Basic Information

Item Value
gene id CI01000001_10856786_10861403
gene name C1GALT1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10855960 ~ 10862138 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_10856786_10861403.mRNA
CTATATAACACAGTATTGCAGAATGTTATTTCTTTTATCCGTGCAAGATATATTTAATAACTTAATATTAAATGCAGCATTCTGTCTATTAATCCTGTCTATTTTAGATAAAACCAGTTTAGACTTGGATTTGTAAGGTTTTTGCAGGATTTCCTTAGGTAAACACTCGATTTGAACACTTTCATTCAGTTGAAATAGTAGGCCTAGCTGAGATTTAGTTTAGGCTATAGAAAAAATGGTTTCATAAAGTAGGCTATTTCATCTATCATACAGAGGGTTGACTGTAGTATGATGGATGAATTTGTCTACTTTATGAAAGCATTTTATATAGCCTAAACTAAACTTTGTCAAAATTAAATAGCAATATGACTAAAGGCCTGGCAGCAGCAGAAGGTGCCTAATTCTTGGGAATGAGGGTAAGAACCAAGATTTATCAGTCACGCAAGGTAACCAGCTTATAATCTATTCCTCAGATTTACCCTGAATCCTAAAATGGGTTTAGTAGATATCAACATGCTTGAGATGATCTCGATAAGAAGTAAATGGCGTATGCTTTGTGTATTCAATTAAATAATGTTATAATTCAGACAGTATTTAACCCTAATATACAGAGATCTCATGGTGTTTTTCAGATGGACAATTTAGAATTGTAATAATAATTGTAATTATAAAATAATTAAGTAAAATTAGATTTTTTTGTCAATTCATAATGCAAATTAGTATATTAGGATCTTTGTATCCAGACAATCTGAAAATTAATACAATGAAATTAATGTTTTTCTAGCCCTGCAGTGACTGATGTGGGCAGGATCCCTGAGTGGTCACCATGAAAGCAGGAAATTCAAAGTGTGCTTTCTCCCTGGGCTTCCTGGTGGGCAGCTGTACCTTGTACGTCTTCTTGAGACAGGTATGGTTTGAGGAGAGCTTCAGCCGGCAGCATGATGGCAAGAGCAACCTTGCGTCACTGGGGCCAGAGCAAAACACCCCTAACCTTACCTGGAGAGTGGAAGGATCTGCCCTGATCAACCTCAAGCATCCTCACCAGCCAGGAGAGGACGGTCACATTGCAGATGAGCTGTTTAAGAAAGTGCGTATCCTGTGCTGGGTGATGACAGGGCCTAGCAATCTACAGTCAAAGGCTCGGCATGTGAAGGCCACATGGAGTCGTCACTGTAACGTAGTCCTGTTCATGAGCTCTGAAGAGGACCGCAGCTTCCCCACAGTAGGCCTCGGCACAGGAGAAGGCCGTGACCAGCTGTACTGGAAGACTATTCGTGCCTTCCACTACGCTCTGAAGAACCACGGCGATGAGGCAGACTGGTTCCTCAAAGCAGACGATGACACGTTCGTTGTCGTGGACAATTTGCGCTGGATCTTGTCAAACTACACGGCAGAGCAGCCCATATACTTTGGCAAGAGGTTCAAGCCGTACGCCAAGCAAGGCTACATGAGCGGTGGTGCGGGTTATGTACTCAGCAAAGAGGCCCTGAGAAGGTTTGTGGAGGGTTTTAACACTAAAGTGTGCACTCATACCACCCCAGTGGAAGATCTAGCGATGGGTCAGTGTCTGGAGAAAATGGGAGTGGTAGCAGGAGACTCCAGGGACACACTGCACCGGGAAACCTTCCATCCTTTCATTCCTGAACACCATCTTACTGGAAAGTTCTCCAAGACCTTCTGGTACTGGAATTACTGCTTCTACCCAATTGTAGAAGGCCCACAGTGCTGCTCTGACCTGGCAGTGTCTTTCCACTATGTAGACCCTGTGCTAATGTACACGCTTGAGTACTACACTTACCGTCTGAGGCCCTATGGCTACCAACACCGCTACCAGCCTCCAGTGCCTGCTGTACTGTCTTTGGCTCCCCACACTGTGAAACCCACCACAGAAGCTCAGAGATTAGAGGAGCGTTTTAAAGAAAAGTCAGTTTCAACGTACACCATAAATCCCAGAGCTGAGAACGTGAAGAGTACTGAAACAACAAGTCACAGAGTCACAAATGCTGCCCAGGGGAGAAATATAACAGACAGAAGCACAGCATGATTGTGAATATGATAATATTGCAGAAAATATTGCATTATGTAAATCCAAAATGACTAATGTGAATGTGATGAGCATTTTAGATCACCCAGTGTCCTGTGCAGATGGAGTGGTGTGGTGTCGTGGATACAGATCTGGGCTAATAACCAAAAGCTGTAGGTTCAAACCTCAACAGAGAACAATTTTTGCCATTATGGCTGTTGATCAAGTAACTTGACCAGTTGTACATGGTATTAAGAGAACTGCAAGTCACTTTAGAAAAGTCTTTTGCTACTTACTATGGATTTGGTGATAAGGTCCTGCTATTTGATTATTAAATTGTTTTGCTGCTTCCTGGTCCAAGCGCAGTAAAAGTGTCTGATTTACAAGCTTTATTTCATTATAGACCAAGAACATAAAGAGCTTTGGTAGTTTTGTATTTCAACAATGAGATGAAAATGAAAAGCTACATTTCATATAATAACCAATGATTCTTTGGGGTTTCTTTAACATCTCTTAACTTGGAAAGTTCAGATGGCCTTTTTGTTGTGATCTTGAAGTATTAAACAGAGGGACACAATCTTTAGTATGATTATGCTGACACCAAGTTATAATACACATAGGTTTGGTATACATAATTATATATGCAGTTGGCAATGAGAAAGCCTGTGTTTTGGCAAATGTAGCAAATTATTGTTGTGTACATTTTTTTGCTTGGTCGAAGTCACTACATTTTATGCGTTACTGAACGTTTAAGTA

Function

symbol description
c1galt1a Predicted to enable glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity. Predicted to be involved in O-glycan processing, core 1. Predicted to act upstream of or within O-glycan processing. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human C1GALT1 (core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1).

GO:

id name namespace
GO:0016267 O-glycan processing, core 1 biological_process

KEGG:

id description
K00731 C1GALT1; glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_10856786_10861403.mRNA True 2779 mRNA 0.41 3 10855960 10862138

Neighbor

gene id symbol gene type direction distance location
CI01000001_10807407_10818870 SLC26A10 coding upstream 35907 10807320 ~ 10820053 (+)
CI01000001_10749174_10779222 ARHGEF25A coding upstream 76506 10749174 ~ 10779454 (+)
CI01000001_10715529_10716091 NA coding upstream 139050 10715114 ~ 10716910 (+)
CI01000001_10694664_10713151 NA coding upstream 141276 10694467 ~ 10714684 (+)
CI01000001_10688354_10691353 NA coding upstream 164551 10687862 ~ 10691409 (+)
CI01000001_10968536_10981345 NA coding downstream 106206 10968344 ~ 10981787 (+)
CI01000001_10989337_10992917 BIRC5B coding downstream 127199 10989337 ~ 10992978 (+)
CI01000001_11019871_11028065 MYL6, MYL6B coding downstream 157341 11019479 ~ 11028524 (+)
CI01000001_11099313_11137500 HUWE1 coding downstream 237175 11099313 ~ 11138278 (+)
CI01000001_11138617_11139541 NA coding downstream 276147 11138285 ~ 11139673 (+)
G19080 NA non-coding upstream 40258 10814390 ~ 10815702 (+)
G18998 NA non-coding upstream 198689 10655387 ~ 10657271 (+)
G19041 NA non-coding upstream 201038 10654569 ~ 10654922 (+)
G18997 NA non-coding upstream 256709 10599026 ~ 10599251 (+)
G19008 NA non-coding upstream 257146 10598604 ~ 10598814 (+)
G19087 NA non-coding downstream 11844 10873982 ~ 10874233 (+)
G19088 NA non-coding downstream 12532 10874670 ~ 10874871 (+)
G19034 NA non-coding downstream 30299 10892437 ~ 10896905 (+)
G19130 NA non-coding downstream 63390 10925528 ~ 10986466 (+)
G19121 NA non-coding downstream 208766 11070904 ~ 11126159 (+)
G19039 NA other upstream 1977 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 316114 10538388 ~ 10539846 (+)
G18937 NA other upstream 379571 10474984 ~ 10476389 (+)
CI01000001_10395420_10396473 NA other upstream 459255 10394851 ~ 10396705 (+)
G18872 NA other upstream 574591 10271146 ~ 10281369 (+)
G19314 NA other downstream 639056 11501194 ~ 11558673 (+)
G19395 NA other downstream 819184 11681322 ~ 11681817 (+)
CI01000001_13514115_13517063 NA other downstream 2651266 13514115 ~ 13517063 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location