XLOC_021927 (si:ch73-217b7.1)


Basic Information

Item Value
gene id XLOC_021927
gene name si:ch73-217b7.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 39854566 ~ 39941025 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043422
TACTAAGCGCGCGCTCTAATCCCCTCATGTGACGTCGGTGAAATGGCGGAGCGGGATGGAAGCGACGTCTGTCAGAGTTCCAGCCAAGGCTCTGACTACCTTCTCAGGGCAGATGAAAAGTCATCATGGAGTCGACCAGACTCATCTGCCTCTGGACAGTACACCTACACTATCCCCAGCCCCACAGAGATACACACCGTTACCAAACCAGAGCCTCTCATGCTGAAGAATGATGAACGGCAGAGACTCGCCCGCGAACGGAGGGAGGAGCTGGACAAGCAGAACGCTGTACGGGGCTCCAAGTGGCAGGAGAGAGAGGAAAGAGCCCGGCAGTTTCATGAGAGACAGCTGGAGGAGCGCAAGAAAAGGTTGGAGGAGCAGCGGATGAAGGAGGACAAGAGACGTGCTGCTGTGGAGGAAAAACGACGGCAGAAGCTGGAGGAGGAGAAGGTACGGTATGAGGCCGTTATCAGGAGGACAATGGAGAGGAGTCAAAGAGCCAGGCCTAAGTCGAATCGCTGGAGCTGGGGTGGAACACTTTCTGTTAGCACCTCACACAATAGCGATGCTGACAGAAGGTCAGTCTCCACTATGAATCTGTCCAAACACACAGATCCAGTCATTTCCAAACGCCTGTCATCGTCCTCAGCCACCTTGCTGAATTCACCAGATAGAGGTATGCGTCGCATGCCCCTTACTCCATGGGAGAACACAGTGATAAGTCGATTACAGACGCCAACACACTCCTATCTGGCCAGGAGTCGCAGCGCCATGTCTTTATCTGGAGAAGCAGCTTCCTGTCACCCAATGAGCTCCATGTCCTTCAAGTCCATCCAGTCACGTAGCGCCGAACGGCCAATGAAAGCAGGCCTTAATCTGGAGAGACCAATCAGAGCAGGCTTTATTCCTCCAGATGGCAGCAATCGCAGAAAGATCACTCAGAATATCATGATTGACAGGAAGGATAAAGACAATGTGAGGAAGTCATGGAGTAACCTGTCATATCCCACTCCCAGTTTGAGTCTTTTCACACCTAAGAGAGCTCCTTCACCTGTCGGCCATCGCAGCAGGGTCACCAATCCATCCCCTAATAGGAGCTCTACTGCTAAACCCTTTCAGAAGACACCAAACCCCAAAAAGTCCAggtctcctcctcctccagcatCAATCCCGCTGTCTCATAGCAATCCGTCCTTATCGCCAGGCAATCTCAGGCCCAGCAGACCGACATCCGAGAGCCTGAGAGTTACAGCAGAAAGAGAGGCGGCCAAAAAGGAGGACGTAGAACCTCCTAAAACTGAACCGGAAGCTCCATTGACTACAACAGAGCCTAGTTCTGAAGCTTCTGGAAGTTCTCCTGGAGGCCGTCCCTCTGCAGGCACCACTGATCCAGAGGAGGCCTCTCGTCTGCTGGCTGAGAAACGACGGCAGGCCAGagaacagagagaaagagaagaagagGAGAAGAGGCAGCAGGAAGAGgctgaaagGCGCAGCAGGGAGGAAATGGCCCGCAGGAAGGCAGAAGAGCGAGCGAAGAGAGAGGAGGAGGCACAGCGGCAGGCGGAGGAGAAGAGgagaaaagaggaggaggagatgcGTTTAGAAGAGGAGAGAGCGCAGAGGGAGAGAGAAGAAGCCGAACGCCTGCAGAAACAAAAAGAGGAAGAGGAGGCTCGCCAGAAAGAAGAAGCAGAGCGCTTGCGTCTGGAGAGAGAGAAACACTTCCAGAAAGAGGAGGCTGAGAGAATGGAGAGGAAGAAACGCCTTGAGGAAATTATGAAGCGCACACGCAGATCTGATCAGGTAAGAAATGAGGCCTGCAAGACAATTGAAGCCTGCTTTTCAGGATTGCAGCCTGTAATTTAA
>TCONS_00043421
TACTAAGCGCGCGCTCTAATCCCCTCATGTGACGTCGGTGAAATGGCGGAGCGGGATGGAAGCGACGTCTGTCAGAGTTCCAGCCAAGGCTCTGACTACCTTCTCAGGGCAGATGAAAAGTCATCATGGAGTCGACCAGACTCATCTGCCTCTGGACAGTACACCTACACTATCCCCAGCCCCACAGAGATACACACCGTTACCAAACCAGAGCCTCTCATGCTGAAGAATGATGAACGGCAGAGACTCGCCCGCGAACGGAGGGAGGAGCTGGACAAGCAGAACGCTGTACGGGGCTCCAAGTGGCAGGAGAGAGAGGAAAGAGCCCGGCAGTTTCATGAGAGACAGCTGGAGGAGCGCAAGAAAAGGTTGGAGGAGCAGCGGATGAAGGAGGACAAGAGACGTGCTGCTGTGGAGGAAAAACGACGGCAGAAGCTGGAGGAGGAGAAGGTACGGTATGAGGCCGTTATCAGGAGGACAATGGAGAGGAGTCAAAGAGCCAGGCCTAAGTCGAATCGCTGGAGCTGGGGTGGAACACTTTCTGTTAGCACCTCACACAATAGCGATGCTGACAGAAGGTCAGTCTCCACTATGAATCTGTCCAAACACACAGATCCAGTCATTTCCAAACGCCTGTCATCGTCCTCAGCCACCTTGCTGAATTCACCAGATAGAGCCTTACGGAAGCAGACATCTTTCTCGTCGTCTTGCTTGCTTAAAAAAACACTATCTAAATCCCAAATCTCCAGAGAGAAGACCCCTCAGGACAAAACAGCAGGTATGCGTCGCATGCCCCTTACTCCATGGGAGAACACAGTGATAAGTCGATTACAGACGCCAACACACTCCTATCTGGCCAGGAGTCGCAGCGCCATGTCTTTATCTGGAGAAGCAGCTTCCTGTCACCCAATGAGCTCCATGTCCTTCAAGTCCATCCAGTCACGTAGCGCCGAACGGCCAATGAAAGCAGGCCTTAATCTGGAGAGACCAATCAGAGCAGGCTTTATTCCTCCAGATGGCAGCAATCGCAGAAAGATCACTCAGAATATCATGATTGACAGGAAGGATAAAGACAATGTGAGGAAGTCATGGAGTAACCTGTCATATCCCACTCCCAGTTTGAGTCTTTTCACACCTAAGAGAGCTCCTTCACCTGTCGGCCATCGCAGCAGGGTCACCAATCCATCCCCTAATAGGAGCTCTACTGCTAAACCCTTTCAGAAGACACCAAACCCCAAAAAGTCCAggtctcctcctcctccagcatCAATCCCGCTGTCTCATAGCAATCCGTCCTTATCGCCAGGCAATCTCAGGCCCAGCAGACCGACATCCGAGAGCCTGAGAGTTACAGCAGAAAGAGAGGCGGCCAAAAAGGAGGACGTAGAACCTCCTAAAACTGAACCGGAAGCTCCATTGACTACAACAGAGCCTAGTTCTGAAGCTTCTGGAAGTTCTCCTGGAGGCCGTCCCTCTGCAGGCACCACTGATCCAGAGGAGGCCTCTCGTCTGCTGGCTGAGAAACGACGGCAGGCCAGagaacagagagaaagagaagaagagGAGAAGAGGCAGCAGGAAGAGgctgaaagGCGCAGCAGGGAGGAAATGGCCCGCAGGAAGGCAGAAGAGCGAGCGAAGAGAGAGGAGGAGGCACAGCGGCAGGCGGAGGAGAAGAGgagaaaagaggaggaggagatgcGTTTAGAAGAGGAGAGAGCGCAGAGGGAGAGAGAAGAAGCCGAACGCCTGCAGAAACAAAAAGAGGAAGAGGAGGCTCGCCAGAAAGAAGAAGCAGAGCGCTTGCGTCTGGAGAGAGAGAAACACTTCCAGAAAGAGGAGGCTGAGAGAATGGAGAGGAAGAAACGCCTTGAGGAAATTATGAAGCGCACACGCAGATCTGATCAGGTAAGAAATGAGGCCTGCAAGACAATTGAAGCCTGCTTTTCAGGATTGCAGCCTGTAATTTAA
>TCONS_00043423
GACGTCGGTGAAATGGCGGAGCGGGATGGAAGCGACGTCTGTCAGAGTTCCAGCCAAGGCTCTGACTACCTTCTCAGGGCAGATGAAAAGTCATCATGGAGTCGACCAGACTCATCTGCCTCTGGACAGTACACCTACACTATCCCCAGCCCCACAGAGATACACACCGTTACCAAACCAGAGCCTCTCATGCTGAAGAATGATGAACGGCAGAGACTCGCCCGCGAACGGAGGGAGGAGCTGGACAAGCAGAACGCTGTACGGGGCTCCAAGTGGCAGGAGAGAGAGGAAAGAGCCCGGCAGTTTCATGAGAGACAGCTGGAGGAGCGCAAGAAAAGGTTGGAGGAGCAGCGGATGAAGGAGGACAAGAGACGTGCTGCTGTGGAGGAAAAACGACGGCAGAAGCTGGAGGAGGAGAAGGTACGGTATGAGGCCGTTATCAGGAGGACAATGGAGAGGAGTCAAAGAGCCAGGCCTAAGTCGAATCGCTGGAGCTGGGGTGGAACACTTTCTGTTAGCACCTCACACAATAGCGATGCTGACAGAAGGTCAGTCTCCACTATGAATCTGTCCAAACACACAGATCCAGTCATTTCCAAACGCCTGTCATCGTCCTCAGCCACCTTGCTGAATTCACCAGATAGAGCCTTACGGAAGCAGACATCTTTCTCGTCGTCTTGCTTGCTTAAAAAAACACTATCTAAATCCCAAATCTCCAGAGAGAAGACCCCTCAGGACAAAACAGCAGGTATGCGTCGCATGCCCCTTACTCCATGGGAGAACACAGTGATAAGTCGATTACAGACGCCAACACACTCCTATCTGGCCAGGAGTCGCAGCGCCATGTCTTTATCTGGAGAAGCAGCTTCCTGTCACCCAATGAGCTCCATGTCCTTCAAGTCCATCCAGTCACGTAGCGCCGAACGGCCAATGAAAGCAGGCCTTAATCTGGAGAGACCAATCAGAGCAGGCTTTATTCCTCCAGATGGCAGCAATCGCAGAAAGATCACTCAGAATATCATGATTGACAGGAAGGATAAAGACAATGTGAGGAAGTCATGGAGTAACCTGTCATATCCCACTCCCAGTTTGAGTCTTTTCACACCTAAGAGAGCTCCTTCACCTGTCGGCCATCGCAGCAGGGTCACCAATCCATCCCCTAATAGGAGCTCTACTGCTAAACCCTTTCAGAAGACACCAAACCCCAAAAAGTCCAggtctcctcctcctccagcatCAATCCCGCTGTCTCATAGCAATCCGTCCTTATCGCCAGGCAATCTCAGGCCCAGCAGACCGACATCCGAGAGCCTGAGAGTTACAGCAGAAAGAGAGGCGGCCAAAAAGGAGGACGTAGAACCTCCTAAAACTGAACCGGAAGCTCCATTGACTACAACAGAGCCTAGTTCTGAAGCTTCTGGAAGTTCTCCTGGAGGCCGTCCCTCTGCAGGCACCACTGATCCAGAGGAGGCCTCTCGTCTGCTGGCTGAGAAACGACGGCAGGCCAGagaacagagagaaagagaagaagagGAGAAGAGGCAGCAGGAAGAGgctgaaagGCGCAGCAGGGAGGAAATGGCCCGCAGGAAGGCAGAAGAGCGAGCGAAGAGAGAGGAGGAGGCACAGCGGCAGGCGGAGGAGAAGAGgagaaaagaggaggaggagatgcGTTTAGAAGAGGAGAGAGCGCAGAGGGAGAGAGAAGAAGCCGAACGCCTGCAGAAACAAAAAGAGGAAGAGGAGGCTCGCCAGAAAGAAGAAGCAGAGCGCTTGCGTCTGGAGAGAGAGAAACACTTCCAGAAAGAGGAGGCTGAGAGAATGGAGAGGAAGAAACGCCTTGAGGAAATTATGAAGCGCACACGCAGATCTGATCAGAAAACCACCCCGCAGAGAAATGGAGATGTCAGTCAGCAGAGTGGACAGGATCCAGGTTCAGTGTCCGGCGGTCCCTCAGTGAGTGTGTCTGACCCTCTGGCTTCAGAGACCTTAGAGACGGTACAGAGCGACAGTAATGGACACACGGGGCCAAGCTACATTACACCTGTACTGCCCACATCAGGTCACAGCATGTCTGCACTACTCCGAGAAAACGGCACTATTAACGAGACCTTCGAGCAGGTCATAGAGGTTCCTCTGGCGAACAAACTGTCCCGTCAAGATGGAGATGGAGAAGAGCTTGacagagaggaggaggaggagaggaaaCGTCCCTTTTTGGCCTTCAGAGAGAACGGCAGCACACATAACGTGAGCGAACTGAATGAGGAGCCAACGCTGTAGAGTTCAGATGTATGAATATTTATAATGGTGGAAGTGCAACAAGCAACATAAGGAAGAGAAATACTAAGAAAATGAAGTACTTCTCTTCGTCTGAATCCAACTCAACCTAAAATGGCAAACCAAACAAAACGTCTCTTGGCCGTTCTCTTGACTTCCGGTTATCATTTTCCCCCAAAACTGAAGTGGGTCGCTCCAGAAACCACATCTTCCATCACTGGGGGAGAAaccactgaagccaaatctaatACTTGAAGAGAAATGTGCCCTCTTTCGAGGAAGCTCTTGCGAAGTGCTGACCGTAAGGAATGTGTGACTATCGAGAAAATGATGTATGTCATGTGGGCGTCACTTTACAGCAAAATCCTGTCTTTTTGCTCCCGTTAAGCCAGCAGTTTGAGTTGGCTGAACTCTCTGCTTAGTTTTATAATTGCTGTTTAAATGAAGAGAGCAttttttcttccctctttgtaaAGCTTGAACGGATTATTGCCTCTATGCATTTATGCATCTTTGGTCGCTCGGCTCATTCCACCCCAGTATAcgcagtttgagatgatttgttTTTGTCTAATAAGTTTGGGTTGTTtgaatctcaaaaaaaaaaatccatcaaatATTTAACACAAAATTAAATGGAATACATGCATGttatttatgttaaaataaagcttattttcctcaattaatcataattattatggCCTAAAATGTAGATACTGTGTAAATTGTGAAGTGTATATATGGAAAGTTACCAAATGTTCTACTGCCTTTTAATGTAAtgctgatttaaa

Function

GO:

id name namespace
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0015630 microtubule cytoskeleton cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description

Ensembl:

ensembl_id ENSDARG00000104435

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043422 False 1869 mRNA 0.53 14 39854566 39933527
TCONS_00043421 False 1971 mRNA 0.53 15 39854566 39933527
TCONS_00043423 True 3074 mRNA 0.49 19 39854596 39941025

Neighbor

gene id symbol gene type direction distance location
XLOC_021926 NA coding upstream 101602 39752488 ~ 39752964 (+)
XLOC_021925 tmco4 coding upstream 127219 39695827 ~ 39727347 (+)
XLOC_021924 otud3 coding upstream 227885 39611688 ~ 39626681 (+)
XLOC_021923 g0s2 coding upstream 246887 39606108 ~ 39607679 (+)
XLOC_021922 camk1gb coding upstream 256665 39558508 ~ 39597901 (+)
XLOC_021928 fyco1a coding downstream 22574 39963599 ~ 40043212 (+)
XLOC_021929 ghrhrl coding downstream 168328 40109353 ~ 40126859 (+)
XLOC_021930 gpsm2l coding downstream 192111 40133136 ~ 40186528 (+)
XLOC_021931 tent5ab coding downstream 334375 40275400 ~ 40286059 (+)
XLOC_021932 CABZ01067001.1 coding downstream 365219 40306244 ~ 40306371 (+)
XLOC_021918 CABZ01054023.1 non-coding upstream 670257 39183246 ~ 39184309 (+)
XLOC_021914 NA non-coding upstream 1299271 38537568 ~ 38555295 (+)
XLOC_021913 FO904868.1 non-coding upstream 1518682 38335760 ~ 38335884 (+)
XLOC_021912 CABZ01070579.1 non-coding upstream 1557777 38266163 ~ 38296789 (+)
XLOC_021935 CR354556.1 non-coding downstream 525477 40466502 ~ 40472088 (+)
XLOC_021936 CR354556.3 non-coding downstream 536195 40477220 ~ 40480582 (+)
XLOC_021937 NA non-coding downstream 583369 40524394 ~ 40526983 (+)
XLOC_021939 CR405692.1 non-coding downstream 811679 40752704 ~ 40752818 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G12898 NA unknown CI01000001 null 367242 ~ 397133 (-)